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2,039 papers
Overview A prospectively frozen benchmark suite for leakage-safe multi-omic integration. It evaluates predictive performance, modality utility, null behavior, failure handling, and compute cost without making claims of clinical utility or causal biological inference. Included datasets Synthetic controls: paired null an...
Overview A prospectively frozen benchmark suite for leakage-safe multi-omic integration. It evaluates predictive performance, modality utility, null behavior, failure handling, and compute cost without making claims of clinical utility or causal biological inference. Included datasets Synthetic controls: paired null an...
Colorectal cancer (CRC) is a widespread health issue that attains high mortality. The adaptor protein SH3BP2 amplification results in metabolic changes, oxidative stress, NK cell activity, and inflammation. The NK cells are capable of destroying tumor cells without prior activation, help prevent metastasis, and have pr...
This research investigates the application of non-linear constraint optimization to biological systems, specifically focusing on optimization of gene expression and protein folding. Traditional optimization methods often struggle with the inherent complexity and dynamic nature of biological systems, necessitating novel...
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Dynamic Symmetry Field Analysis (DSFA) is a novel technique for unraveling the intricate patterns within complex systems, specifically focusing on identifying and quantifying 'dynamic symmetry fields.' This research explores the potential of employing a new mathematical operator to analyze the evolution of these fields...
Here you can find the data from the study "Quadrupling the protein family space with global metagenomics". For Protein Families: iso_clusters25_names.tsv.bz2 Description: TSV file of isolate clusters with more than 25 members. Columns: (1)Cluster name (2)Representative isolate protein header (3) Isolate protein member...
Repeat proteins fold through pathways that are strongly shaped by local energetics, making them highly sensitive to mutations. The ankyrin repeat (AR) domain of IκBα is a cooperative folding unit in which the first four repeats (AR1–AR4) are stable, while the last two are destabilized. Despite this simple modular archi...
Molecular dynamics (MD) simulations are a fundamental tool in materials science, biology, and pharmaceutical research, offering insights into molecular behavior and dynamics. However, traditional MD simulations often suffer from limitations in accuracy and efficiency, particularly when dealing with complex, dynamic env...
Optical tweezers using metal nanostructures have leveraged extreme subwavelength focusing to circumvent the diffraction limit, enabling the isolation and label-free sensing of single nanoparticles. Over the past two decades, nanoaperture optical tweezers (NOTs) have matured into a useful tool for biophysical analysis,...
Lignocellulosic biomass is one of the most abundantly available renewable energy sources, but it is entirely underutilized. Composed of a matrix of cellulose and hemicellulose polysaccharides, biochemical deconstruction of this substrate can yield fermentable sugars for biofuel production. Within a typical biorefinery,...
The results suggest that the increased heat tolerance of T. californicus may be driven by a combination of these emergent proteins, several proteins induced by hypersalinity in both single- and multi-stressor conditions that may contribute to cross-tolerance, and four proteins with additive abundance patterns.
Derived data, run outputs and figure source data supporting the article "Joint optimisation of amino acid and coding sequence for de novo designed proteins". Includes the inverse-folding marginals for all 862 backbones and the full 230,992-row double-mutant additivity table.
Proof of concept for watermarking AI-generated proteins while preserving biological function.
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.
Scientists are using AlphaFold to strengthen a photosynthesis enzyme for resilient, heat-tolerant crops.
Explore how AlphaFold has accelerated science and fueled a global wave of biological discovery.
AlphaFold has revealed the structure of a key protein behind heart disease
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