Quadrupling the protein family space with global metagenomics

Abstract

Here you can find the data from the study "Quadrupling the protein family space with global metagenomics". For Protein Families: iso_clusters25_names.tsv.bz2 Description: TSV file of isolate clusters with more than 25 members. Columns: (1)Cluster name (2)Representative isolate protein header (3) Isolate protein member header (4)Isolate protein member sequence metag_clusters25_names.tsv.bz2 Description: TSV file of metagenomic clusters with more than 25 members. Columns: (1) Cluster name (2) Representative metagenomic protein header (3) Metagenomic protein member header (4) Metagenomic protein member sequence For Protein Folds structures.tar.gz Description: Contains three subfolders with protein structure models HQ:High-Quality (pTM ≥ 0.7) models (26,767 pdb files) MQ:Medium-Quality (0.5 ≤ pTM < 0.7) models(47,823 pdb files) LQ:Low-Quality (pTM < 0.5) models (82,018 pdb files) foldseek_results.tar.gz Description: You will find three folders (HQ, MQ & LQ). Each one contains three files: AF2.tblout (unfiltered hits to AlphaFoldDB) CATH.tblout (unfiltered hits to CATH) PDB.tblout (unfiltered hits to PDB) NMPFAMSDB2_MODELS_SCORES.txt Description: A txt file with pTM and pLDDT score for each family model. Columns: (1) Family name Column (2) pTm score Column (3)pLDDT score