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protein folding

1,957 papers

#protein folding Open access Sep 2026

Photocurable Polypeptide and Recombinant-Protein Materials: Sequence, Functionalisation, Folding and Network Attribution

Photocurable recombinant proteins and engineered polypeptides offer sequence-level control that is unavailable in most natural extracts or synthetic polymers. That control is meaningful only if molecular identity, folding state, functionalisation and network formation remain traceable through processing. Chemical modif...

Juan Segurola · 0 citations
#protein folding Open access Sep 2026

For a Drug the Liver Extracts Almost Completely, Blood Flow Sets the Injection and Enzymes Set the Pill ── for a drug with extraction ratio 0.95, halving the liver's enzyme activity raises exposure to an injection only 1.050000-fold while exposure to a pill exactly doubles ── when liver blood flow falls to 70 per cent the roles reverse ── [Paper 591]

It is said that when the liver weakens, drugs act too strongly. What this paper shows is that the same change in the liver acts differently on an injection and on a pill, and that for a drug the liver removes almost completely (high extraction ratio) the injection is governed by liver blood flow and the pill by the liv...

Yuuki Yamagishi · 0 citations
#protein folding Open access Sep 2026

Integrated QTL-seq and transcriptome analyses identify a DUF1677 candidate gene with a Predicted Kelch β-propeller-like fold associated with iron deficiency response in rice

Structural analyses indicated that OsFe2200 adopts a putative Kelch β-propeller-like fold, while additional structural comparisons identified β-propeller- and Kelch-like proteins as moderate confidence homologs, suggesting that OsFe2200 is a structurally conserved but sequence divergent protein.

Siddharth Panda, Nandita Banerjee, Ananya Sinha et al. · 0 citations
#protein folding Sep 2026

De Novo Discovery of Cysteine-Targeted Reversible Covalent Cyclic Peptides with Prolonged Residence Time via Phage Display

Reversible covalent targeting of cysteine residues offers a powerful strategy for generating potent and tunable ligands, but designing electrophiles with balanced reactivity, stability, and reversible binding remains challenging. Here, we systematically optimized reversible α,β-unsaturated nitrile electrophiles and i...

Yu-Qian Zhang, Meng-Zhu Qi, Xian-Kai Liu et al. · 0 citations
#protein folding Sep 2026

Biochemical Studies on Gamma Radiation Effects in Honey Bee (Apis mellifera) Workers

Honey bees (Apis mellifera) are highly sensitive to environmental stressors, including gamma radiation. We evaluated the biochemical responses of adult worker bees to graded gamma-irradiation doses (20, 30, 40 and 50 rad). Total soluble protein content and the activities of key enzymes; superoxide dismutase (SOD), cata...

Mohamed M. Abdel-Monsef, Sameh G. Sawires, Doaa A. Darwish · 0 citations
#protein folding Open access Sep 2026

Hydrophobic Patterns and Folding Thermodynamics-Kinetics in a 2D HP Model

Protein folding is a process in which the linear amino acid chain is transformed into a stable three-dimensional native structure which enables the protein to carry out its function. In several neurodegenerative diseases, including Alzheimer's disease (amyloid-β) and Huntington's disease (huntingtin), a pathological me...

Yi-Yuan Xie · 0 citations
#protein folding Preprint Sep 2026

SparseDesign: Scaling Exact Coding-Sequence Design

This work proves equivalence to the dense recurrence in real arithmetic, under an explicit scalar branch-interface assumption, and applies candidate sparsification to the multiloop recurrence of a Turner~2004 dangle-0 solver over a weighted codon automaton.

Hao-Ying Lin, Jing Yu · 0 citations
#graph neural networks Open access Sep 2026

A comparative analysis of graph neural networks and classical machine learning for carbapenem-resistance prediction and genomic interpretation in Acinetobacter baumannii

Carbapenem-resistant Acinetobacter baumannii is a hospital-associated pathogen linked to high mortality and limited treatment options. Although many resistance determinants have been identified, how they organize into coordinated systems remains unclear. Using a final binary modeling dataset of 2,448 g...

Irfan Sharif Shaik, Morteza Sarmadi · 0 citations
#protein folding Open access Sep 2026

Diverse structural features and putative functional roles of early-stage Austropuccinia psidii effector proteins

Successive genome improvements reveal that while AP5292 and AP143 remain conserved, AP1260 and especially AP10948 have expanded into highly divergent multi-haplotype families, with AP10948 now comprising 25 tandemly duplicated variants.

J. V. Sullivan, M. Currie, P. J. Prendergast et al. · 0 citations
#protein folding Open access Sep 2026

State-selective inhibition of alpha-synuclein aggregation by de novo oligomer-binding proteins

Deep learning-based protein design is used to generate de novo binders capturing this region of α-synuclein in a β-strand conformation to establish a set of molecules that target distinct aggregation intermediates and mechanistically reshape αSyn assembly.

Yun-Xuan Zhang, Hannah L. Han, L. Ortigosa-Pascual et al. · 0 citations
#protein folding Open access Sep 2026

Computational design of a thermostable α-helical barrel protein with tunable active-site positioning

Over the last decades, transformative catalytic strategies have emerged, with biocatalysis currently exerting a substantial influence on the pharmaceutical and fine chemical sectors. Fast progress in the design of efficient enzymatic processes, however, suffers from the lack of readily available, stable, and customizab...

Wael Elaily, David Stoll, Morakot Chakatok et al. · 3 citations
#protein folding Sep 2026

Tumor-responsive hyalo-chitosan nanoparticles for targeted delivery of andrographolide in CD44+ breast cancer cells.

Andrographolide (AG) has been reported for its anticancer activity. However, it is classified as a class IV in the biopharmaceutics classification system (BCS). Therefore, AG possesses low bioavailability due to its low solubility and permeability. In this study, hyaluronic acid-coated chitosan nanoparticles (Hyalo-CS-...

Sohaila A. Shoala, H. Abbas, H. Elbedaiwy et al. · 0 citations

From tech blogs

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Google DeepMind Blog Sep 30, 2026

Introducing SynthID Bio

Proof of concept for watermarking AI-generated proteins while preserving biological function.

MIT News · Artificial Intelligence Aug 27, 2026

Looking beyond natural sequences

A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.

Google DeepMind Blog Nov 25, 2025

AlphaFold: Five years of impact

Explore how AlphaFold has accelerated science and fueled a global wave of biological discovery.

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