Carbapenem-resistant
Acinetobacter baumannii
is a hospital-associated pathogen linked to high mortality and limited treatment options. Although many resistance determinants have been identified, how they organize into coordinated systems remains unclear.
Using a final binary modeling dataset of 2,448 g...
Irfan Sharif Shaik, Morteza Sarmadi· Frontiers in Bioinformatics· 0 citations
Successive genome improvements reveal that while AP5292 and AP143 remain conserved, AP1260 and especially AP10948 have expanded into highly divergent multi-haplotype families, with AP10948 now comprising 25 tandemly duplicated variants.
J. V. Sullivan, M. Currie, P. J. Prendergast et al.· Australasian Plant Pathology· 0 citations
Deep learning-based protein design is used to generate de novo binders capturing this region of α-synuclein in a β-strand conformation to establish a set of molecules that target distinct aggregation intermediates and mechanistically reshape αSyn assembly.
Yun-Xuan Zhang, Hannah L. Han, L. Ortigosa-Pascual et al.· bioRxiv· 0 citations
Over the last decades, transformative catalytic strategies have emerged, with biocatalysis currently exerting a substantial influence on the pharmaceutical and fine chemical sectors. Fast progress in the design of efficient enzymatic processes, however, suffers from the lack of readily available, stable, and customizab...
Wael Elaily, David Stoll, Morakot Chakatok et al.· bioRxiv· 3 citations
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Andrographolide (AG) has been reported for its anticancer activity. However, it is classified as a class IV in the biopharmaceutics classification system (BCS). Therefore, AG possesses low bioavailability due to its low solubility and permeability. In this study, hyaluronic acid-coated chitosan nanoparticles (Hyalo-CS-...
Sohaila A. Shoala, H. Abbas, H. Elbedaiwy et al.· European journal of pharmace...· 0 citations
An extensive molecular dynamics simulations study to investigate the conformational dynamics and unfolding pathway of the TAF15-RRM domain in 8 M urea revealed that unfolding proceeds through stable, denaturant/temperature-accelerated partially unfolded intermediate ensembles that, by analogy with aggregation-prone int...
Vishakha Chaudhary, Priyanka Kataria, Kusum Yadav et al.· Journal of Biomolecular Stru...· 0 citations
Molecular rotors are valuable probes for studying local microenvironments because their optical behavior is closely linked to conformational dynamics. In this study, a chromyl-naphthyl (HCNP) donor-π-acceptor molecular rotor was developed for viscosity-responsive fluorescence and selective interaction with human serum...
Anju Ranolia, L. Narayan, M. K. Katiyar et al.· Journal of materials chemist...· 0 citations
SPINET is introduced, which predicts sequences from molecular dynamics trajectories that uses cellular sheaves to represent residue interactions within each frame and recurrent units to integrate information across frames, then predicts all amino acids in a single pass.
Jens Lundsgaard, Colin Mikulski, Zhi-Xuan Yan et al.· 0 citations
Sequence-specific detection of double-stranded DNA (dsDNA) under physiological conditions remains challenging because the complementary strand is inaccessible to conventional oligonucleotide probes, often requiring thermal denaturation or protein-assisted strand separation. Here, we developed a binary DNAzyme (BiDz)...
M. Ateiah, Vladislav A. Reushev, Nairouz Deeb et al.· Analytical Chemistry· 0 citations
Glyphosate resistance in weeds is often mediated by target-site changes in 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), but non-target-site resistance (NTSR) mechanisms are increasingly recognized as important contributors to field-evolved resistance. Here, we characterized a glyphosate-resistant
Eleusine in...
Yun-Long Li, Yi-Kai Dong, Yueh-Chih Su et al.· Frontiers in Plant Science· 0 citations
A combined biomarker model integrating coagulation and immune parameters provides moderate-to-good predictive performance for RSA, which may facilitate early risk stratification and individualized management, although external validation is required before routine implementation.
Yu-Cu Xie, Ping-Ping Huang, Xiao-Fen Gao et al.· Pakistan Journal of Medical...· 0 citations
Low concentrations of MGO enhanced human CC viability, reduced apoptosis, and boosted antioxidant defenses and proliferation-related pathways suggest MGO’s biomedical potential in cell survival and anti-apoptotic effects on reproductive medicine research.
Fahimeh Kabiri, T. Foroutan, Roghiyeh Pashaei-Asl et al.· Advanced Pharmaceutical Bull...· 0 citations
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.
