Sep 2026· Journal of Agricultural and Food Chemistry· 0 citations· 47 references
Enzyme Structure and Function
Abstract
Mesophilic enzymes are often less active at low and moderate temperatures than their psychrophilic homologues. The earthworm Eisenia fetida has cold-adapted enzymes, but the end-β-1,4-mannanase shows weaker activity at low temperatures compared with other E. fetida enzymes. Cold-adapted enzymes need flexible structures, particularly around the active site, to achieve high activity at low temperatures. Salt bridges contribute to the rigidity and stability of proteins. We focused on salt bridges, including pairwise or bifurcated hydrogen bonds between arginine and glutamic acid/aspartic acid in E. fetida mannanase. The mutation of Asp316 or Arg318 in these salt bridges increased the low-temperature activity, especially the Arg318Lys mutant, which exhibited nearly 2.5-fold higher activity than the wild-type at 10–20 °C while largely preserving its thermal stability. Thus, softening the salt bridge by the arginine-to-lysine mutation based on the tertiary structural information increased low-temperature activity while largely preserving thermal stability.
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Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or seque...
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.