Coupling metabolic reprogramming with sacrificial cell lysis: multi-omics insights into an ascorbic acid-associated Se(IV) reduction and extrusion hypothesis in Lactiplantibacillus plantarum
Mechanisms supporting microbial survival under lethal selenite [Se(IV)] concentrations during bioremediation remain elusive. This study employed integrated multi-omics to analyze Lactiplantibacillus plantarum BSe (LPB) under extreme Se(IV) stress. LPB achieved 76.32% removal at 100 mM Se(IV), but this high efficiency came at a significant cost to cell viability and intracellular biomass. Multi-omics integration suggested a sophisticated survival strategy coupling metabolic reprogramming with a sacrificial cell lysis. Specifically, carbon flux was redirected from glycolysis to the pentose phosphate pathway to fuel NADPH generation. Furthermore, a > 35-fold surge in intracellular dehydroascorbic acid strongly suggests the putative activation of de novo ascorbic acid synthesis as a potential alternative reductant pathway. Finally, multi-omics data lead us to propose a mechanism whereby LPB adopts a putative sacrificial cell lysis to extrude SeNPs, evidenced by the downregulation of peptidoglycan-binding proteins and concurrent upregulation of autolysins like lysozyme and RecX. Collectively, these findings suggest LPB survives lethal Se(IV) stress through a trade-off mechanism: rewiring metabolism to power an ascorbic acid-associated Se(IV) reduction pathway while sacrificing structural integrity to export SeNPs.
The comparison of adopter and non-adopter sample reveals three potential adoption inhibitor, security, data privacy, and portability, which underlines the importance of the technical and security perspectives for research investigating the adoption of technology.
Nattakarn Phaphoom, Xiaofeng Wang, S. Samuel et al.· Journal of Systems and Softw...· 111 citations· ⚡8
This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
This paper highlights the challenges to conduct proper affect-related studies with psychology, provides a comprehensive literature review in affect theory, and proposes guidelines for conducting psychoempirical software engineering.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· SSE@SIGSOFT FSE· 56 citations· ⚡4
This study conducts a multiple case study on twenty European software startups and proposes a prototype-centric learning model in early stage software startups, and identifies factors that occur as barriers but also facilitators for prototyping in earlystage software startups.
Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or sequence constraints.
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.