Towards Structured Mechanistic Reasoning in Single-cell Prediction

Yun-Hui Jang Kaist Lu Zhu Jake Fawkes Ali Denton Dominique Beaini Emmanuel Noutahi Mark S. Chen Jerry Tworek Hee-woo Jun Qi-Ming Yuan Henrique Pondé Oliveira Pinto J. Kaplan Harri Edwards Yuri Burda Nicholas Joseph Greg Brockman A. Ray Raul Puri G. Krueger Michael Petrov Heidy Khlaaf G. Sastry Pamela Mishkin Brooke Chan K. Cobbe V. Kosaraju Mo Bavarian Lukasz Kaiser Matthias Plappert Jacob Hilton Reiichiro Nakano Christopher Hesse D. Croft Gavin O'Kelly Guang-Ming Wu R. Haw M. Gillespie L. Matthews M. Caudy Da-Ya Guo De-Jian Yang Hao-Wei Zhang Jun-Mei Song Ruo-Yu Zhang Run-Xin Xu Qi-Hao Zhu Shi-Rong Ma Pei-Yi Wang Xiao Bi Xiao-Kang Zhang Xing-Kai Yu Yu Wu Z.-F. Wu Zhibin Gou Zhi-Hong Shao Zhuo-Shu Li Zi-Yi Gao Carly Edwards Tu-Tam Lai Kevin Ros Garrett Honke Bo-Fei Gao Fei-Fan Song Zhen-Mei Yang Ze-Fan Cai Yi-Bo Miao Qingxiu Dong Lei Li Cheng-Hao Ma Liang-Yu Chen Luz Garcia-Alonso Christian H. Holland Mahmoud M. Ibrahim Denes Turei J. Sáez-Rodríguez Benchmark Aaron Grattafiori Abhimanyu Dubey Abhinav Jauhri Abhinav Pandey Abhishek Kadian Ahmad Al-Dahle Aiesha Letman Akhil Mathur A. Schelten Yu Gu Robert Tinn Hao Cheng Michael R. Lucas N. Usuyama Xiao-Dong Liu Tristan Naumann Jian-Feng Gao Hoi-Fung Poon E. Guha Ryan Marten Sedrick Scott Keh Negin Raoof G. Smyrnis Hritik Bansal Marianna Nezhurina Jean Mercat T. Vu Z. Sprague Ashima Suvarna Ben Feuer Liang-Yu Chen Zaid Khan Eric Frankel Sachin Grover Caroline Choi Yang Han Zi-Ping Wan Lu Chen Kai Yu A. Istrate F. Milletarì Fabrizio Castrotorres Jakub M. Tomczak Michaela Torkar Donghui Minoru Kanehisa Miho Furumichi Yoko Sato Masayuki Kawashima Mao Ishiguro-Watanabe David Mendez A. Gaulton Patrícia Bento Jon Chambers M. De Veij Eloy Félix María Paula Juan F. Magariños Prudence Mosquera Mutowo Jason S. Hartford Prudencio Tossou Shawn T. Whitfield Cas Wognum Kristina Ulicna Michael Craig J.-J. Hsu Michael Cuccarese Emmanuel Bengio Dominique Beaini Christopher Gibson Daniel Cohen Adam Richardson Ahmed El-Kishky Aiden Low Alec Helyar Aleksander Madry Alex Beutel Alex Carney Alex Iftimie Alexander Karpenko Alex Tachard Passos Alexander Neitz A. Prokofiev Alexander Wei Allison Tam Saro Passaro Gabriele Corso Jeremy Wohlwend Mateo Reveiz Stephan Thaler Vignesh Ram Somnath N. Getz T. Portnoi Julien Roy Hannes Stärk David Kwabi-Addo T. Jaakkola Regina Barzilay. 2025. Boltz-2 Lawrence Phillips Marc Boubnovski Martell Aditya Misra Josefa Lia Stoisser C. Prada-Medina Rory M. Donovan-Maiye Kaspar Märtens David Rogers Mathew Hahn Mario Sänger Zhi-Hong Shao Ming-Chuan Zhang Y.-K. Li Zbyslaw Sondka N. Bindal Denise Dhir S. Carvalho-Silva Jupe Karen Null Madhumita McLaren Mike Sari Starkey Jennifer W. Ward Madiha Wilding Fangcong Yin Juan Diego Ro-driguez Dong-Wei Jiang Manya Wadhwa Prasann Singhal Xin-Yuan Zhao Xiao-Yun Ye Kyle Mahowald Greg Durrett To A. Subramanian P. Tamayo V. Mootha Sayan Mukherjee Benjamin L. Ebert M. Gillette A. Paulovich Scott L. Pomeroy T. Golub Eric S. Lander Frederik Wenkel Wilson Tu Cassandra Masschelein Hamed Shirzad Cian Eastwood Shawn T. Whitfield Meng-Hua Wu Russell Littman Jacob H. Levine Ling Qiu Tommaso Biancalani David Richmond J. Huetter Contextualizing Shi-Dan Wu Shi-Yue Zhao Michihiro Yasunaga Ke-Xin Huang Kaidi Cao Qiang Huang Vassilis N. Ioannidis Karthik Subbian James Zou Jure Leskovec 2024b Stark An-Zun Yang An-Feng Li Bao-Song Yang Bei-Chen Zhang Binyuan Hui Bo-Yuan Zheng Bo-Wen Yu Chang Gao Chen-Gen Huang Chen-Xu Lv Chu-Jie Zheng Dayiheng Liu Fan-Miao Zhou Fei-Dong Huang Feng-Ling Hu Hao-Quan Ge Hao-Ran Wei Huan-Tze Lin Jesse Zhang Airol A. Ubas R. de Borja Valentine Svensson Nicole Thomas Neha Thakar Ian Lai Aidan Winters Umair Khan Matthew G. Jones Vuong K. Tran Joey Pangallo E. Papalexi Ajay A. Sapre Hoai Nguyen Oliver Sanderson Maria Nigos Olivia Kaplan Sarah Schroeder Qiang Zhang Kei-Yang Ding T. Lyv Xing-Da Wang

Semantic Scholar