Aug 2026· Zenodo (CERN European Organization for Nuclear Research)
Pharmacogenetics and Drug Metabolism
Abstract
Interindividual variability in drug response arises from the complex interplay between inherited pharmacogenomic traits and environmental exposures. While genetic polymorphisms in cytochrome P450 (CYP450) enzymes are well-established determinants of metabolic capacity, the modulatory effects of environmental pollutants on these pharmacogenomic profiles remain insufficiently quantified in murine models. This systematic review and quantitative synthesis examined the impact of heavy metals, polycyclic aromatic hydrocarbons (PAHs), dioxins, pesticides, and airborne particulate matter on CYP450-mediated drug metabolism in mice, with emphasis on exposure-specific mechanisms and pharmacogenomic interactions. A comprehensive search of PubMed, Scopus, Web of Science, and Google Scholar (2000–2024) identified 85 relevant studies, of which 42 met inclusion criteria and provided quantitative data. Dioxins produced the most potent CYP1A1 induction (mean fold change: 5.8 ± 2.3; n = 8 studies), followed by PAHs (4.2 ± 1.8; n = 12), airborne PM2.5 (3.5 ± 1.2; n = 4), and heavy metals (2.1 ± 0.9; n = 6), whereas heavy metals also induced CYP2E1 (2.9 ± 1.1; n = 7) and pesticides induced CYP3A11 (2.0 ± 0.7; n = 6). Three primary mechanistic pathways were identified: nuclear receptor-mediated transcriptional induction (AhR, CAR, PXR), epigenetic modification (DNA methylation, histone alteration), and oxidative stress with direct protein damage. Genetic background significantly modified pollutant responses, with Cyp1a1-null and humanized CYP transgenic mice demonstrating strain-specific metabolic outcomes. These findings demonstrate that environmental pollutants profoundly reshape pharmacogenomic landscapes of drug metabolism in mice through compound-specific, dose-dependent, and genetically modified pathways, supporting the integration of exposomic data into pharmacogenomic frameworks to predict drug response variability in contaminated environments. Keywords: pharmacogenomics; drug metabolism; environmental pollutants; cytochrome P450; mice; xenobiotics; heavy metals; polycyclic aromatic hydrocarbons; exposome.
The comparison of adopter and non-adopter sample reveals three potential adoption inhibitor, security, data privacy, and portability, which underlines the importance of the technical and security perspectives for research investigating the adoption of technology.
Nattakarn Phaphoom, Xiaofeng Wang, S. Samuel et al.· Journal of Systems and Softw...· 111 citations· ⚡8
This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
This paper highlights the challenges to conduct proper affect-related studies with psychology, provides a comprehensive literature review in affect theory, and proposes guidelines for conducting psychoempirical software engineering.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· SSE@SIGSOFT FSE· 56 citations· ⚡4
This study conducts a multiple case study on twenty European software startups and proposes a prototype-centric learning model in early stage software startups, and identifies factors that occur as barriers but also facilitators for prototyping in earlystage software startups.
Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or seque...
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.