Oct 2026· Biopolymers· Vol 117· 0 citations· 55 references
Medicine
TL;DR
It is indicated that three polyglycine strands can form a collagen triple helix when flanked by triple‐helical clamps, consistent with the idea that the triple‐helical architecture predates the recruitment of Pro and Hyp, informs the evolutionary origin of collagen, and offers a blunt‐ended, symmetric scaffold for designing peptidic triple helices.
Abstract
ABSTRACT The collagen triple helix is the most abundant protein structural motif in animals. It tolerates any amino acid in its Xaa and Yaa positions but demands glycine (Gly) at every third position, where the residue packs into the sterically forbidding core of the triple helix and donates the recurring interstrand N–H⋯O=C hydrogen bond that stitches the three strands together. (2S)‐Proline (Pro) and (2S,4R)‐4‐hydroxyproline (Hyp) are enriched far above their proteome‐wide abundance because they preorganize individual strands into the polyproline II conformation, lowering the entropic cost of folding. We asked whether the triple helix is intrinsically stable enough to form from strands that carry no such preorganization, that is, from polyglycine. To offset the conformational entropy of a Gly‐rich tract, we embedded Gly6 within flanking triple‐helical (Pro‐Hyp‐Gly) n clamps in Ac‐(Pro‐Hyp‐Gly)6‐Gly6‐(Pro‐Hyp‐Gly)5‐Pro‐Hyp‐NH2 and compared it with an otherwise identical peptide in which Gly6 was replaced by two [2‐(2‐aminoethoxy)ethoxy]acetic acid units, a flexible, length‐matched spacer that lacks most of the regularly spaced backbone amides of Gly6. Circular dichroism spectroscopy revealed the diagnostic positive band at 225 nm. The molar ellipticity of the spacer‐containing control was 86% of that of the Gly6‐containing peptide, matching the 35/41 = 85% ratio of residues capable of triple‐helix formation and consistent with the Gly6 segment contributing to the triple‐helical signal. Thermal denaturation yielded a T m of 46.8°C for the Gly6‐containing peptide, 6.3°C higher than that of the matched spacer control. This added stability indicates that the polyglycine tract is not merely accommodated within the helix but contributes stabilizing interstrand hydrogen bonds. Together, these data indicate that three polyglycine strands can form a collagen triple helix when flanked by triple‐helical clamps. This result is consistent with the idea that the triple‐helical architecture predates the recruitment of Pro and Hyp, informs the evolutionary origin of collagen, and offers a blunt‐ended, symmetric scaffold for designing peptidic triple helices.
ABSTRACT Collagen cross‐linking is essential for the structural integrity of the extracellular matrix. In several pathological conditions, the triple‐helical core of collagen is disrupted, and proline‐rich single strands occur. Lysyl oxidases (LOXs), enzymes that initiate cross‐linking by catalyzing the oxidative deami...
L. Poller, Tomas Fiala, H. Wennemers· Angewandte Chemie· 0 citations
Frame-dependent stability of collagen triple helices is well documented, but its structural origin remained unresolved. Here we identify a C-terminal β-turn-like conformational state with intramolecular CO···HN contacts as the competing motif governing this behavior. In POG-frame collagen mimetic peptides, a C-termin...
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S. Povilonienė, G. Sasnauskas, G. Tamulaitienė et al.· Protein Science· 0 citations
Hydrogen bonds contribute substantially to the stabilisation of specific three‐dimensional structures of peptides. The C5 hydrogen bond is an intraresidue interaction, which appears to contribute to the stabilisation of fully extended residue conformations, with backbone torsion angles (φ, ψ) lying close to ±180°. The...
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Energy decomposition showed that favorable solvation and van der Waals contributions outweighed the electrostatic penalty, indicating that leucine zipper stability reflects a balance of electrostatics, solvation, packing, and positional context.
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A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.