Oct 2026· Research Portal (Queen's University Belfast)
Vector-borne infectious diseases
Abstract
Lyme disease, caused by the spirochetal bacterium Borrelia burgdorferi, remains the most prevalent vector-borne illness in humans. Addressing challenges such as antibiotic resistance, persistent infection, and complex disease dynamics requires identifying novel therapeutic targets. Manganese (Mn²˖) is essential for the survival of burgdorferi, serving as a cofactor for enzymes that protect against oxidative stress, particularly superoxide dismutase. The Borrelia metal transporter A (BmtA), a membra protein responsible for Mn²˖ uptake, is critical for bacterial infectivity, making it a promising drug target. This study characterized the structural and functional properties BmtA to elucidate its role in manganese transport. A structural model was generated using AlphaFold2 and compared with bacterial and mammalian ZIP transporters to identify metal-binding residues. Site-directed mutagenesis and functional analyses in a yeast expression system, combined with PAR metal-binding and ICP-MS assays, identified residues H133, E137, and E203 as essential for Mn²˖ transport. Zinc was also found to stabilize BmtA, with deficiency resulting in protein degradation. For biochemical characterization, optimal solubilization and purification were achieved using n-Dodecyl-β-D-Maltopyranoside (DDM), maintaining the protein’s dimeric stat as confirmed by Blue Native PAGE and crosslinking experiments. Metal-binding and thermal shift assays demonstrated that Mn²˖ induced conformational stabilization, whereas Zn²˖ had minimal impact. Mutations at key residues disrupted folding and stability, highlighting the importance of metal coordination.Overall, this study enhance understanding of BmtA’s structure–function relationship and supports its potential as a therapeutic target for combating Lyme disease. Thesis is embargoed until 31 December 2026.
The comparison of adopter and non-adopter sample reveals three potential adoption inhibitor, security, data privacy, and portability, which underlines the importance of the technical and security perspectives for research investigating the adoption of technology.
Nattakarn Phaphoom, Xiaofeng Wang, S. Samuel et al.· Journal of Systems and Softw...· 111 citations· ⚡8
This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
This paper highlights the challenges to conduct proper affect-related studies with psychology, provides a comprehensive literature review in affect theory, and proposes guidelines for conducting psychoempirical software engineering.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· SSE@SIGSOFT FSE· 56 citations· ⚡4
This study conducts a multiple case study on twenty European software startups and proposes a prototype-centric learning model in early stage software startups, and identifies factors that occur as barriers but also facilitators for prototyping in earlystage software startups.
Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or seque...
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.