A structural model of L2 within the capsid is developed using cryo-EM single particle analysis of HPV16 pseudovirus capsids with and without the L2 protein combined with AlphaFold3 predictions and molecular dynamics simulations to develop a structural basis for understanding how L2 is organized in the capsid poised to initiate its action during virus entry.
Poxviruses are a family of large, complex double-stranded DNA viruses that includes human pathogens such as variola-the cause of smallpox-and monkeypox. Recent outbreaks of mpox underscore the need for a better understanding of poxvirus biology1,2. Poxvirus assembly is a conserved process that involves the formation of...
T. Calcraft, Miguel Hernández-González, Michael Way et al.· Nature· 0 citations
This work provides novel insights into paramyxoviral protein complexes, structures, and morphology in NiV by interrogating the protein:protein interactions of the main NiV structural proteins M/N/F/G.
Viraj Upadhye, Jean F. Lee, Nihan Ercanli et al.· bioRxiv· 0 citations
The identification of two possible non-symmetrical small-molecule binding pockets at the dimer interface, and one in the CYL zing finger region are reported, and the druggability of these pockets, as well as unresolved issues in SVP biology, are discussed.
A. Cuconati, K. Fan, Gideon Tolufashe et al.· Antiviral Research· 0 citations
Overall, the results suggest that vRNPs from influenza virus type A, B and D share the same right-handed antiparallel helical conformation and that the B/NP N-terminal tail does not participate to the helical architecture stabilization once the vRNPs are assembled.
Marie Thirion, A. J. Stelfox, Florian Chenavier et al.· PLoS Pathogens· 0 citations
Comparison of the two alternative wild-type virion structures and the mutant virion structures supports the existence of two conformational states of the RV virion in the absence of cell receptor: a basal state with well-structured RNA duplexes, and an activated, RNA release-prone state in which the RNA duplexes are pa...
Juan M. Martínez-Romero, Luis Valiente, J. Vilas et al.· Journal of Molecular Biology· 1 citation
It is shown that many particles of tick-borne encephalitis virus (TBEV) are asymmetric and lack subsets of surface heterodimers, explaining how flaviviruses can be neutralized by antibodies that bind to regions of E proteins normally inaccessible in the spiky or herringbone structures.
Tibor Füzik, Maria Anastasina, Peter Pajtinka et al.· Science Advances· 0 citations
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.