guyeux-claude-plugins: Claude Code plugin marketplace for academic bacterial-pathogen phylogenomics and research-project lifecycle management
Abstract
Version 1.0.0, first public release. A marketplace of 18 Claude Code plugins (218 skills) built for the Guyeux research group (FEMTO-ST): evolutionary phylogenomics of clonal bacterial pathogens (Mycobacterium tuberculosis complex, Yersinia, Leptospira), human population genetics, scientific writing, and cross-domain tooling (bioinformatics, protein structure, statistics, literature review, visualization). Contents: mtbc, bacteria, popgen, ia, maboss, ops, droit, multimedia, web, phylo, bioinfo, structure, litterature, science-commun, redaction, diffusion, carriere plugins, plus cycle -- a domain-agnostic research-project lifecycle toolkit (lab notebook, research-leads registry, consolidated state of knowledge, five-phase cycle with closure gates, pre-flight and post-result adversarial checks, reframing and scope triage, model/effort routing under usage quotas, dataset versioning, project scaffolding), usable beyond phylogenomics for any long-running research project. Source repository: https://github.com/cguyeux/guyeux-claude-plugins