Skip to content
#gene editing Open access

The Evolution of Crucial Vertebrate Muscle Proteins

Aug 2026 · Zenodo (CERN European Organization for Nuclear Research)

Abstract

Supplemental data failes to accompany the dissertation titled "The Evolution of Crucial Verterbate Muscle Proteins." Descriptions of files are provided below. Data S1: Myosin expression values and sample metadata from publicly available datasets. The file does not contain Lonchura striata expression data. NCBI accession numbers for both myosin loci and sample expression sets are provided. XLSX format. Data S2: Phylogenetic tree of cardiac myosin sequences with bootstrap support values. Tree is reflected graphically in Supplemental Figure S1. Newick format. Data S3. Multiple sequence alignment of vertebrate cardiac myosins. Alignment was used to generate the tree depicted in Supplemental Figure S1 and included in Data S2. FASTA format. Accession numbers included in sequence IDs. Data S4. List of vertebrate myosin sequences. The file also contains explanations of why sequences may have been excluded or descriptions of any manual edits made. CSV format. Data S5. Phylogenetic tree of avian cardiac myosins with bootstrap support values. This tree is depicted graphically in Figure 4C. Newick format. Data S6. Multiple sequence alignment of avian cardiac myosins. Alignment was used to generate the tree depicted in Figure 4C and included in Data S5. FASTA format. Accession numbers provided in sequence IDs. Data S7. Multiple sequence alignment of passerine and nonpasserine MYH6 and MYH6B sequences. Alignment was used to generate percent identity scores between passerine MYH6, nonpasserine MYH6, and passerine MYH6B. FASTA format. Data S8. Multiple sequence alignment used to generate 100% consensus sites between MYH6 and MYH6B sequences for passerine and nonpasserine birds. FASTA format. Data S9. Multiple sequence alignment of chicken myosin sequences from previous publications and NCBI reference genome. FASTA format. Data S10. Multiple sequence alignment of Sauropsid MYH15. Alignment was used to test for evidence of selection. FASTA format. Data S11. Phylogenetic tree of MYH15 sequences. Tree was used to test for evidence of selection. Newick format. Data S12. Expression data for Lonchura striata hearts. Multi-tabbed spreadsheet with proportion of MYH expressed, summarized MYH expression per sample, and NCBI genes used to quantify MYH expression. XLSX format.

View source

Similar papers

#gene editing Review Sep 2026

Unlocking non-model organisms with CRISPR-Cas: A roadmap for sustainable biotechnology.

It is concluded that bridging the gap between foundational CRISPR research and its real-world applications is imperative and future efforts should focus on democratizing tools via open-source platforms, advancing delivery systems, and fostering sustainable innovation through synthetic biology integration to fully realize the transformative potential of genome editing in organisms beyond model organisms.

S. Sarsaiya, Archana Jain, Jishuang Chen et al. · 2 citations
#gene editing Review Open access Aug 2026

Overcoming Therapy Resistance in Ovarian Cancer: From Molecular Mechanisms to Emerging Therapeutic Strategies

This review summarizes emerging therapeutic strategies for EOC, their mechanisms of action, and their potential to overcome treatment resistance, and covers molecularly targeted therapies, immunotherapies, metabolic and epigenetic approaches, cellular and gene therapies, targeted drug-delivery systems, and locoregional and physical modalities.

Zofia Pietrasik, Mikołaj Kapała, Joanna Pietrasik et al. · 0 citations
#gene editing Review Open access Aug 2026

Environmental Risk Assessment and Confinement of Genetically Engineered Trees with an Emphasis on Vegetative Reproduction.

Genetic engineering (GE) and gene editing may endow traits to trees such as increased biomass and the production of novel biomaterials. Long-lived organisms such as trees might be subject to biotechnology-related risks that could be different than those of annual row crops. Those risks could be relevant to production in engineered plantations and beyond plantations to natural forests. Therefore, appropriate risk regulation is important to assure biosafety of commercialized engineered trees. In addition to gene flow via sexual reproduction, vegetative reproduction might play an additional role in environmental "exposure" risk relative to transgene dispersal in GE tree plantations. While vegetative reproduction is beneficial for preserving desired genetic traits during tree propagation, it may lead to proximal clonal spread in the field. Although the environmental risks associated with vegetative reproduction of GE trees are recognized in commercial forestry, there are few field-based environmental risk assessment (ERA) studies on dispersal risks of self-propagated GE trees. GE or gene editing of target genes involved in the vegetative propagation processes may be useful to mitigate environmental risks of clonal spread through vegetative reproduction. This review provides updates for recent field test results of GE and gene edited trees. Gene candidates related to vegetative reproduction including adventitious shooting (AS) and adventitious rooting (AR) are discussed herein as a means to mitigate unintended clonal spread from GE tree plantations.

Yongil Yang, C. N. Stewart · 0 citations
#gene editing Open access Aug 2026

Programmable RNA targeting with clustered regularly interspaced short palindromic repeats (CRISPR) effector Cas7-11 in zebrafish embryos and mammalian cells

Findings establish Cas7-11 as a precise and efficient RNA knockdown tool for functional studies in embryonic development and stem cell biology, providing a versatile alternative to DNA-based gene-editing approaches.

Huan Yan, Imtiaz Ul Hassan, Kai Yan et al. · 0 citations

Related blog posts

MIT News · Artificial Intelligence Aug 17, 2026

Q&A: Rethinking how innovation happens

In his latest book, Professor Eugene Fitzgerald examines the forces that turn breakthroughs into value — and why innovation resists simple formulas.