small language model

github.com/broadinstitute/gatk-sv/MainVcfQc

GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...

Structured PREreview of "Mitigating LLM Prompt Injections via Multi-Vector Representation and Voting-Based Routing"

This Zenodo record is a permanently preserved version of a Structured PREreview. You can view the complete PREreview at https://prereview.org/reviews/22919717. Does the introduction explain the objective of the research presented in the preprint? Yes Justification: The introduction and abstract clearly articulate the s...

The Logical Structure of Clinical Trial Eligibility Criteria: A Corpus-Scale Measurement of Disjunction in Non-Small-Cell Lung Cancer Trials

Hosting versus Deriving the Born Rule in Registration Theory: A Conditional Theorem, Native Quadratic Invariants, and Obstructions

This status report asks whether Registration Theory (RT) derives the qubit Born rule, P(+) = cos²φ, from its own deterministic registration dynamics, or only hosts a construction that reproduces it. RT's canonical finite model is the four-node adaptive consequence-registration field (ACRF-4).Main results:A conditional...

VSF: A Multimodal Few-Shot Plant Disease Recognition Method in Agricultural Scenarios

A visual–semantic multimodal fusion framework is developed, incorporating a Two-Stage Modality Fusion mechanism that projects semantic and visual features into a unified feature space to optimize cross-modal feature interaction.

github.com/broadinstitute/gatk-sv/GenotypeComplexVariants

GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...

The Cognitive Trade-off: A Correlational Analysis of Artificial Intelligence Usage and Adolescent Academic Performance

Recent international evaluations show a decline in adolescent literacy and complex cognitive skills. The decline is clearest in capacities needed in the digital era, such as evaluating information, integrating multiple sources, and critical reading (OECD, 2026). This drop has been most pronounced among socio-economical...

A Multi-Integrated Approach to Tinnitus Phenotype-Guided Otolaryngological, Dental, and Physiotherapeutic Care

Background: Tinnitus is a heterogeneous percept that becomes a disorder when it is accompanied by clinically meaningful distress or functional impairment. Hearing loss is a major contributor, while temporomandibular, cervical, sleep, psychological, and contextual factors can shape symptom expression. This heterogeneity...

Cache-Fused Kinematic Rails: Ex-Ante Silicon Alignment via In-Vivo KV-Cache Metric Grafting

Abstract of Cache-Fused Kinematic Rails: Ex-Ante Silicon Alignment via In-Vivo KV-Cache Metric Grafting Current Large Language Model (LLM) alignment relies primarily on post-hoc, output-level correction mechanisms such as external API meta-governors, Reinforcement Learning from Human Feedback (RLHF), or post-generation...

From Category Strings to Category Scores: A Controlled Screening Study of Transformer Output Interfaces

Extreme multi-label classification asks a model to identify a small set of relevant labels from a large catalog. A general-purpose language model can write label identifiers as text, but the same pretrained Transformer can instead score every label in one pass. We study this output-interface choice on a fixed 20,000-ex...

FIE-sLLM Benchmark v1.0: ontology-constrained decoding for small open language models on clinical nutrition abstracts (code, results, raw outputs)

Companion material for the article Ontology-Constrained Decoding for Small Open Language Models: Structural Gains, Content Trade-offs, and Silent Omission in Clinical Nutrition Abstract Extraction (submitted to IEEE Access, 2026). Six open small language models (Granite-4.0-1B, Qwen3-1.7B, Qwen3-4B-Instruct-2507, Phi-4...

github.com/broadinstitute/gatk-sv/FilterBatchSamples

GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...