GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw callers and evidence co...
broadinstitute
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GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
broadinstitute
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Abstract of Beyond Loss Convergence: The Geometric Convergence Index and the Crystallization Horizon of Transformer Manifolds Determining when Large Language Model (LLM) pre-training is structurally complete remains one of the most critical open challenges in artificial intelligence. Contemporary foundation model pipel...
Daniel Solis
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Cloud vision–language models diagnose plant disease well but bill per query and need connectivity, anda conventional classifier has no output unit for an unseen crop. We ask what lets a small, frozen vision–language model diagnose crops it was never trained on. On the SAGE dataset, four frozen compactcontrastive encode...
PV Abhiram, Rahul Ananthasayanam, Prof. Gaurav Shrivastava
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GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
broadinstitute
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GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw callers and evidence co...
broadinstitute
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That oil-drop charges are integer multiples of the elementary charge e is a classic piece of evidence for the quantization of charge. But do those data rule out smaller units such as half or a third of e? With the charges of 40 oil drops made by random numbers, the Euclidean algorithm, peak heights and counts of odd mu...
Yuuki Yamagishi
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Retrieval-Augmented Generation (RAG) has emerged as a principled solution to the knowledge limitations of large language models (LLMs). We design and implement a complete RAG pipeline built on LangChain, ChromaDB with HNSW indexing, BAAI/bge-small-en-v1.5 embeddings, and LLaMA 3.3 70B deployed on Groq LPU infrastructur...
Aymen Ahmed Fouatih, Oussama Djebbar Senouci
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Replication package for the paper "When Retrieval Helps and When It Hurts: A Pre-Registered Cross-Lingual RAG Benchmark for Small Language Models in Greek and Georgian" (submitted to Baltic Journal of Modern Computing, 2026). Contains: all pipeline scripts (01–11), the final question dataset (230 K-12 science questions...
Christos Pappas
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Vaayu is a 492M parameter Small Language Model purpose-built for machine-to-machine tool orchestration with native Model Context Protocol support. It autonomously reads and interacts with raw JSON-RPC 2.0 schemas to serve as a secure, local runtime engine for agent loops.
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Large language models (LLMs) are increasingly being used as ad hoc therapists. While prior research has found that LLMs outperform human counselors in generating single-turn empathetic responses, fewer studies have compared their behaviors across multi-turn sessions. In this study, we compare the session-level behavior...
Zainab Iftikhar, Sean Ransom, Amy Wei Xiao et al.
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GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
broadinstitute
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