The results highlight the limits of relying purely on statistical metrics for model selection, particularly when the goal is to obtain biological insight and underscore the importance of balancing model complexity to avoid overfitting and parameter unidentifiability.
Abstract
Mechanistic mathematical models have been used extensively to provide a deeper understanding of biological mechanisms, including unveiling the regulation of tumour growth and its response to various treatments. However, given the breadth of biological regulatory mechanisms, these models are frequently large and thus prone to potential issues with parameter identifiability. Statistical metrics like the Akaike and Bayesian information criteria can help identify a parsimonious model by balancing goodness of fit against model complexity. Yet simple models may fail to provide sufficient biological insight if they do not adequately capture known physiological processes or mechanisms. A modeller must therefore balance hypothesis generation and biological learning with model tractability. Here, we illustrate this balance using models of ovarian cancer growth and treatment response to cisplatin and immune checkpoint blockade in homologous recombination (HR)-deficient and HR-proficient immunocompetent mouse models. We develop a hierarchy of mathematical models of increasing complexity to describe tumour growth, treatment response, and immune dynamics. Our results highlight the limits of relying purely on statistical metrics for model selection, particularly when the goal is to obtain biological insight and underscore the importance of balancing model complexity to avoid overfitting and parameter unidentifiability.
Simple Summary Biology currently runs on two modeling traditions. Mechanistic models write down the processes a biologist believes are at work, so their variables and parameters carry meaning, but they are slow to build and hard to fit to the volume of data that modern experiments produce. Deep learning finds patterns...
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Mathematical biology has long relied on mechanistic models, including ordinary and partial differential equations, stochastic systems, and agent-based models, to study biological processes across scales. These approaches remain central because they provide structure, interpretability, and biological insight. However, m...
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Mathematical modeling helps us identify and investigate complex mechanisms of function. This is especially useful for understanding inflammation, which is a complex, multiscale process that interacts nonlinearly with other physiological systems. The full potential of these models can only be realized when combined with...
The goal is not to replace mathematical models by purely empirical predictors, but to develop mathematical foundations and computational work in which trainable representations learn missing mechanisms, interpretable tools explain them, and reliability analysis quantifies when the learned mechanism can be trusted.