It is proposed that the faster folding of TPs, relative to downstream MPs, plays an important role in maintaining preproteins in an import-competent state, and that TPs need to fold into a specific conformation to function properly.
Abstract
Most plastid proteins are encoded by nuclear genes and synthesized in the cytosol as preproteins (or precursors). These preproteins consist of N-terminal TPs (transit peptides) followed by MPs (mature peptides, which ultimately fold into their mature conformations inside plastids). The preproteins are transported across plastid membranes via the TOC/TIC complex. Since the channel of TOC/TIC is too narrow to accommodate fully or highly folded preproteins, it has been widely assumed that preproteins are maintained in an unfolded or partly folded state in the cytosol to facilitate their import. However, whether a dedicated mechanism exists to actively inhibit MP folding in the cytosol remains unclear. Here we show that such a mechanism may not exist, because MPs can acquire folded conformations while still in the cytosol. Surprisingly, we found that two preproteins with identical amino-acid sequences - one produced by de novo synthesis and the other by protease-mediated cleavage - exhibited different organelle-targeting abilities, suggesting that the primary structures of TPs are not sufficient to direct exclusive plastid import and that TPs need to fold into a specific conformation to function properly. Based on these results, we propose that the faster folding of TPs, relative to downstream MPs, plays an important role in maintaining preproteins in an import-competent state.
It is concluded that the early emergence of the Rossmann fold reflects the chemical and physical constraints of protein folding, explaining both its profound antiquity and sustained longevity.
Koh Seya, Tatsuya Corlett, Hamza Giaffar et al.· bioRxiv· 0 citations
This study comprehensively elucidated the role of the presequence and the mature part of mitochondrial precursors in the cytosol, by use of a cytosol-targeted MPP which prematurely processed mitochondrial precursors.
The structure suggests that the ribosome alone, even without a nascent chain, is sufficient for lateral opening of Sec61 in a lipid environment, independent of its functional state.
Stefan Pfeffer, L. Burbaum, Pia Unverdorben et al.· 0 citations
The results indicate that −1PRF and spike protein maturation in alphaviruses is tuned by the dynamic remodeling of the ER translocon, which could allow polyprotein biogenesis to adapt to different stages of viral replication and to distinct host or vector environments.
Antonio Bonifasi, Gayani Apsara Ranasinghe, Ashish Jhangiani et al.· bioRxiv· 0 citations
The hypothesis that the Sec complex is critical for cell wall biogenesis and protein secretion across fungi is supported, and the Phobius model is used to analyze secretion signals across the fungal kingdom.
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.