ZFIN/zfin: Release 1185
Abstract
What's Changed ZFIN-10433: fetch the PANTHER classifications over HTTPS by @cmpich in https://github.com/ZFIN/zfin/pull/1964 ZFIN-10389: Update journals with ISSNs by @cmpich in https://github.com/ZFIN/zfin/pull/1963 ZFIN-10344 Follow-up: Add parameters to make the switchover easier by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1962 ZFIN-10457: Fix marker merge issues by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1960 ZFIN-10261: Rework to fix sort for Gene/Transcript sort by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1967 Hot fix by @cmpich in https://github.com/ZFIN/zfin/pull/1970 ZFIN-10411: Jenkins Jobs Artifacts Moved to TARGETROOT by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1945 ZFIN-10352: Derive real-time protein information from EFGs by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1973 Hibernate metadata warnings by @cmpich in https://github.com/ZFIN/zfin/pull/1965 ZFIN-10481 add the NHGRI-2 wild type line for ZIRC by @cmpich in https://github.com/ZFIN/zfin/pull/1974 Jenkins bugfix + set executable permissions for jenkins-cli by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1977 ZFIN-10371: Revise error handling on feature edit form by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1975 Fix test specifications by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1976 ZFIN-10383 by @cmpich in https://github.com/ZFIN/zfin/pull/1972 ZFIN-10402 and ZFIN-10406 by @cmpich in https://github.com/ZFIN/zfin/pull/1971 release-prompts.sh: warn on unwritable logs, add optional loaddb step by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1966 ZFIN-10403 & ZFIN-10400: Show 2 TALEN sequences instead of 1 by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1985 ZFIN-10452: Fix Blast DB regeneration by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1984 ZFIN-10407 ZFIN-10416 ZFIN-10438 ZFIN-10419 by @cmpich in https://github.com/ZFIN/zfin/pull/1983 Solr snapshots: drop the /v9 segment from the backup and restore paths by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1988 ZFIN-10450 ask which background the mutation was induced on by @cmpich in https://github.com/ZFIN/zfin/pull/1991 ZFIN-10408 narrow the expected-product boxes and put "bp" outside them by @cmpich in https://github.com/ZFIN/zfin/pull/1990 ZFIN-10352: use block comments in DIH query attributes by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1978 ZFIN-10475 & ZFIN-10400: Add validation message for non "ACGT" inputs, move crispr/talen sequence inputs by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1995 ZFIN-10453: Convert legacy TIFF figure images to JPEG by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1969 ZFIN-10497 build the reindex into a staging core and swap it in by @cmpich in https://github.com/ZFIN/zfin/pull/1998 Solr init: materialise a configset, and stop rewriting core.properties by @cmpich in https://github.com/ZFIN/zfin/pull/2000 Hibernate dialect warning by @cmpich in https://github.com/ZFIN/zfin/pull/1992 ZFIN-10497 compute the staging directory instead of deriving it from … by @cmpich in https://github.com/ZFIN/zfin/pull/2001 ZFIN-10420 Yes/No radios for enzyme cleaves, plural digest labels and… by @cmpich in https://github.com/ZFIN/zfin/pull/1997 ZFIN-10358 & ZFIN-10394: accept DOIs as pub IDs in GO loads, report on duplicates by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1993 ZFIN-10413 & ZFIN-10401 & ZFIN-10415: Validate file types - Move CRISPR sequence input field by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1987 ZFIN-10461: reconcile NCBI genome locations by @rtaylorzfin in https://github.com/ZFIN/zfin/pull/1989 ZFIN-10449 changes in the phenotype section. by @cmpich in https://github.com/ZFIN/zfin/pull/1986 ZFIN-10440 put KASP's genomic sequence above the primer trio by @cmpich in https://github.com/ZFIN/zfin/pull/2003 ZFIN-10438 spell out the assay-type labels that were still bare acronyms by @cmpich in https://github.com/ZFIN/zfin/pull/2002 ZFIN-10514 ship external_popularity.txt with the configset, not one c… by @cmpich in https://github.com/ZFIN/zfin/pull/2005 Full Changelog: https://github.com/ZFIN/zfin/compare/v1184...v1185
