Aug 2026· Genetics and Molecular Research· 0 citations· 1 references
TL;DR
Digital phantom simulations are leveraged to systematically evaluate the effect of varying TE and TR on tissue contrast across common anatomical structures, and validate known MRI contrast behaviors and provide scanner-agnostic TE/TR recommendations to accommodate practical clinical constraints.
Abstract
Optimizing echo time (TE) and repetition time (TR) is crucial for enhancing tissue contrast in magnetic resonance imaging (MRI). Traditional approaches to TE/TR selection often rely on empirical methods or scanner-based adjustments, which can be limited by variability and lack of controlled conditions. This study leverages digital phantom simulations to systematically evaluate the effect of varying TE and TR on tissue contrast across common anatomical structures. A realistic digital phantom was constructed using established relaxation parameters for gray matter, white matter, cerebrospinal fluid (CSF), muscle, and fat. MRI signal evolution was simulated using Bloch equations, and contrast between tissue pairs was calculated across a wide TE/TR parameter space. The results demonstrate distinct contrast patterns for different tissue combinations, with optimal TE/TR regions identified for T1-weighted, T2-weighted, and proton-density-weighted imaging. Contrast maps and optimization tables derived from the simulations offer a structured, reproducible framework for protocol design, reducing reliance on empirical parameter selection. The findings validate known MRI contrast behaviors and provide scanner-agnostic TE/TR recommendations to accommodate practical clinical constraints. This work highlights the value of digital phantom-based modeling for enhancing MRI protocol development, enabling more consistent and contrast-efficient imaging outcomes. Future extensions, including advanced simulation platforms, experimental validation, and integration with emerging techniques, will further strengthen the translational potential of this approach.
The proposed dual-echo bSSFP/bDESS method provides a high-SNR and time-efficient strategy for sequence-specific T2-sensitive contrast characterization at ultra-low field.
Sheng Shen, Neha Koonjoo, Hester A. Braaksma et al.· IEEE transactions on bio-med...· 0 citations
Whole-brain multidimensional T1-T2 relaxation imaging is clinically feasible on a portable 0.064 T MRI scanner and may support further developments of quantitative multidimensional imaging at ultra-low field.
Ella Wilczynski, K. Magdoom, A. Avram et al.· bioRxiv· 0 citations
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L. Sanches, Narges Taghizadehsalehabad, R. Moqadam et al.· bioRxiv· 0 citations
Synthetic MRI (SynMRI) enables flexible generation of contrast-weighted images from quantitative T1, T2, and proton density (PD) maps. However, synthetic inversion-recovery (IR) images are often degraded by cerebrospinal fluid (CSF) partial-volume effects (PVE). We developed a sequential model-based framework for suppr...
Tokunori Kimura· Magnetic Resonance Imaging· 0 citations
PURPOSE
To evaluate whether skull density ratio (SDR) estimates required for high-intensity focused ultrasound (HIFU) treatment of tremor can be accurately derived from zero echo time (ZTE) magnetic resonance images (MRI) by comparing them with measurements from computed tomography (CT) scans using an intensity profile...
R. Kälvälä, R. Sequeiros, J. Frantzén et al.· International Journal of Hyp...· 0 citations
Subject motion and gradient heating-induced frequency and phase offsets result in spectral misalignment during single-voxel MR spectroscopy (SVS) acquisitions. Several methods have been presented to align the spectra, but their performance on a 7T system is unclear. This study aimed to evaluate the practical importance...
Chu-Yu Lee, Jia Xu, Bao-Lian Yang et al.· bioRxiv· 0 citations
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