This Primer provides a comprehensive guide to the experimental IMC workflow, covering antibody conjugation and panel design, sample preparation, data acquisition and quality control, and detail the computational analysis pipeline, including image preprocessing, segmentation, feature extraction, and both single-cell and spatial analyses.
Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) has been established as a powerful tool for the spatial characterization of molecules. Recent advances have been driven by improvements in the spatial resolution, acquisition time, and sensitivity. Although MALDI-MSI excels in the label-f...
Ruben Jacobs, Ritesh Chidambaram, Vincent Steinbacher et al.· Analytical Chemistry· 0 citations
A spatial light modulator (SLM) is introduced into the optical system of the imaging flow cytometer to preprocess the forward scattering signals of cells within the optical neural network framework, thereby lowering the subsequent computational burden on images of cells.
Yinyue Ji, Xiao-Qi Dai, Yong-Hong Shao et al.· International Conference on...· 0 citations
Same-tissue section multimodal imaging is a powerful strategy that spatially profiles tissue histology, cell populations and molecular composition while maximizing tissue economy, preserving spatial molecular relationships, and increasing co-registration capacity. However, performing multiple modalities on the same tis...
Jade K. Macdonald, Thai-lai Pham, A. Simmons et al.· bioRxiv· 0 citations
Fluorescence lifetime imaging microscopy (FLIM) is an advanced microscopy technique that enables label-free, non-destructive optical metabolic imaging (OMI) of biological materials at spatiotemporal resolution. Accordingly, FLIM has emerged as a widely used platform for multi-scale characterization of the tumor mic...
Julian Najera, Hao Chen, Scott S. Howard et al.· Cellular and Molecular Bioen...· 0 citations
SCORPy introduces methodological advances for preprocessing multiplexed imaging data: an exposure-aware, cycle-matched background correction strategy, and a normalization framework that harmonizes signal distributions across markers while enabling batch correction across experiments.
Z. Gerber, Samuel Simard, Harshitha Kolipaka et al.· bioRxiv· 1 citation
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