Sep 2026· Zenodo (CERN European Organization for Nuclear Research)
Abstract
Versioned research release of the BBB permeability prediction project. This release preserves the complete source code, experimental results, documentation, figures, and reproducibility materials for the project. Contents: Phase 3: 5-fold scaffold CV classical ML (RF AUROC 0.921+/-0.024) Phase 4: Chemprop GNN ensemble (AUROC 0.935, SCAFFOLD_BALANCED) Matched H2H: RF 0.9031 vs GNN 0.8669 (Fold 0, 296 molecules) Chemical error analysis with Mann-Whitney U tests 6 publication-quality figures Full scientific manuscript and documentation ChemBERTa environment-verified but not trained All experimental results are frozen and provenance-verified. No new model training was performed No experimental CSV files were modified No model checkpoints were altered Repository presentation: README redesigned as a pharma+AI portfolio project CITATION.cff validated against CFF schema v1.2.0 Full documentation in docs/ directory This release includes the corrected CITATION.cff file for proper Zenodo DOI minting.
This publication proposes a definition and a classification of agile software development approaches and analyses ten software development methods that can be characterized as being "agile" against the defined criterion.
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The study shows that agile practices improve both informal and formal communication, but indicates that, in larger development situations involving multiple external stakeholders, a mismatch of adequate communication mechanisms can sometimes even hinder the communication.
M. Pikkarainen, Jukka Haikara, O. Salo et al.· Empirical Software Engineeri...· 401 citations· ⚡48
The results indicate that software engineering work practices are chosen opportunistically, adapted and configured to provide value under the constrains imposed by the startup context.
Nicolò Paternoster, Carmine Giardino, M. Unterkalmsteiner et al.· Information and Software Tec...· 394 citations· ⚡54
The results show that the embedded industry has been able to apply agile methods in its development processes and that the appreciation of the agile methods and their individual practices appears to increase once adopted and applied in practice.
O. Salo, P. Abrahamsson· IET Software· 238 citations· ⚡9
Consequences of happiness and unhappiness that are beneficial and detrimental for developers' mental well-being, the software development process, and the produced artifacts are found.
D. Graziotin, Fabian Fagerholm, Xiaofeng Wang et al.· Journal of Systems and Softw...· 236 citations· ⚡13
The Mobile-D approach is briefly outlined here and the experiences gained from four case studies are discussed, which helped develop an agile development approach for mobile application development.
P. Abrahamsson, Antti Hanhineva, H. Hulkko et al.· Conference on Object-Oriente...· 225 citations· ⚡18
