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protein folding

1,959 papers

#protein folding Open access Sep 2026

Quantitative analysis of proteostasis disruption following siRNA-mediated HSP70 depletion in HeLa cells

Findings are consistent with impaired proteostasis following acute HSP70 depletion and demonstrate the potential utility of an inhibitor-independent workflow for evaluating cellular responses associated with targeted chaperone depletion.

Hatice Esenkaya · 0 citations
#protein folding Open access Sep 2026

Protein Structure Prediction Using AlphaFold: A Deep Learning Approach.

Abstract: Predicting the three-dimensional structure of a protein directly from its amino-acid sequence has remained one of the most persistent open problems in computational biology, commonly referred to as the protein folding problem. For decades, structural information was obtainable only through slow, expensive, an...

Mridhula Muthukumar · 0 citations
#protein folding Open access Sep 2026

A BSCB‐Penetrating Nanoplatform for Enhanced Luteolin Delivery in PRMT2‐Targeted Epigenetic Therapy of Spinal Cord Injury

ABSTRACT Spinal cord injury (SCI) is a devastating disorder of the central nervous system (CNS) leading to irreversible neurological deficits. Effective pharmacotherapy remains elusive, due to the restrictive blood‐spinal cord barrier (BSCB), underscoring the urgent need for targeted and efficient drug delivery strateg...

Yi-Xuan Wang, Bo Jin, Shi-Pian Li et al. · 0 citations
#protein folding Open access Sep 2026

There Is No Pathlessness: An Investigation of Freedom as the First Cause — Architecture of Freedom Intelligence as a Useful Theory of Reality, Navigation, Design, Physics, and Path Availability

I propose that freedom is the true cause of reality because freedom means path availability, and there is no possibility of pathlessness. Everything that exists navigates: water down a slope, photons through a slit, ions across a membrane, a child across a room, a household across a budget. Intelligence is the capacity...

Gonçalo Melo de Magalhães · 0 citations
#protein folding Open access Sep 2026

⚡ CELLULAR MAINTENANCE, METABOLISM & MITOCHONDRIA AT THE LIMIT The Cellular Maintenance Engine of Aging, Energy Resilience, Proteostasis, Autophagy, Nutrient Sensing, and Mitochondrial Quality

⚡ CELLULAR MAINTENANCE, METABOLISM & MITOCHONDRIA AT THE LIMIT The Cellular Maintenance Engine of Aging, Energy Resilience, Proteostasis, Autophagy, Nutrient Sensing, and Mitochondrial Quality Can aging be partially understood as maintenance failure? This flagship research volume explores aging through one of its most...

33 · 0 citations
#protein folding Open access Sep 2026

φ^∞ Lattice-Accelerated Protein Folding: O(N) Structural Prediction via Resonant Manifolds

First public release. Deterministic φ-lattice protein folding engine for the Nexus Resonance Codex (NRC), built on the Trageser Tensor Theorem (TTT) and 2048D φ-spiral manifolds. Experimental research code; APIs may evolve — pin the version.

James Trageser (jtrag) · 0 citations
#protein folding Open access Sep 2026

Nexus-Resonance-Codex/NRC-CASP-17-ENGINE: v0.1.0 — first release

First public release. Deterministic pure math protein folding engine built on the Nexus Resonance Codex (NRC) framework. Experimental research code; APIs may evolve — pin the version.

James Trageser (jtrag) · 0 citations
#protein folding Open access Sep 2026

A Constraint-Space Perspective on Coordinated Gene Expression in a Minimal Cell

This is a Perspective article. Two recent Cell studies (Dobbs et al., 2026; Jensen et al., 2026) used in-cell cryo-electron tomography and visual proteomics in Mycoplasma pneumoniae to resolve structural coordination among transcription, translation, membrane translocation, and extracellular folding.We offer a theoreti...

Kai Huang · 0 citations
#protein folding Open access Sep 2026

⚡ CELLULAR MAINTENANCE, METABOLISM & MITOCHONDRIA AT THE LIMIT The Cellular Maintenance Engine of Aging, Energy Resilience, Proteostasis, Autophagy, Nutrient Sensing, and Mitochondrial Quality

⚡ CELLULAR MAINTENANCE, METABOLISM & MITOCHONDRIA AT THE LIMIT The Cellular Maintenance Engine of Aging, Energy Resilience, Proteostasis, Autophagy, Nutrient Sensing, and Mitochondrial Quality Can aging be partially understood as maintenance failure? This flagship research volume explores aging through one of its most...

33 · 0 citations
#protein folding Open access Sep 2026

Nexus-Resonance-Codex/NRC-CASP-17-ENGINE: v0.1.0 — first release

First public release. Deterministic pure math protein folding engine built on the Nexus Resonance Codex (NRC) framework. Experimental research code; APIs may evolve — pin the version.

James Trageser (jtrag) · 0 citations
#protein folding Open access Sep 2026

Systems toxicology prioritization of HSD11B1 as a candidate PFOA-related metabolic homeostasis node in adrenocortical carcinoma

This study aimed to construct a hypothesis-generating evidence framework linking PFOA-related molecular target annotations to biological alterations in adrenocortical carcinoma (ACC), with emphasis on HSD11B1 as a downregulated adrenal metabolic homeostasis node and an in silico prioritized candidate PFOA-related prote...

Xinzhe Liu, Yanghao Tai, Haoze Liu et al. · 0 citations
#protein folding Open access Sep 2026

Proteolytic Activation of T Cell Engagers And Bispecific Proteins Using Modular Coiled-Coil Peptides.

Bispecific T cell engagers (BiTEs) are engineered immunotherapeutic molecules designed to direct the body's immune system against malignant cells by physically connecting T cells to target cells, triggering cytotoxic responses. BiTEs have typically engaged T cells via αCD3 domains, such as OKT3 or UCHT1, which are link...

Basudeb Mondal, Yusef A. Haikal, Gabriel A. Kwong et al. · 0 citations

From tech blogs

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Google DeepMind Blog Sep 30, 2026

Introducing SynthID Bio

Proof of concept for watermarking AI-generated proteins while preserving biological function.

MIT News · Artificial Intelligence Aug 27, 2026

Looking beyond natural sequences

A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.

Google DeepMind Blog Nov 25, 2025

AlphaFold: Five years of impact

Explore how AlphaFold has accelerated science and fueled a global wave of biological discovery.

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