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protein folding

2,046 papers

#protein folding Review Aug 2026

Dark energy: the cost of function in protein evolution

This work reviews the computational and experimental approaches that disentangle folding and function at scale, revealing a dark energy component and providing new insights into how biological information flows from sequence to structure to function and back to sequence.

Ezequiel A. Galpern, Federico Caamaño, Ignacio E. Sánchez et al. · 0 citations
#protein folding Aug 2026

Impact of hydrolyzed gelatin and hydroxypropyl-β-cyclodextrin as polymeric excipients on physical stability and injectability of high-concentration protein suspensions.

The current work highlighted the potential of polymer-based excipient systems for developing high-concentration injectable suspensions of proteins and their combinations on the viscosity, injectability, and stability.

Chanakya D. Patil, Yi-Jing Huang, K. Arte et al. · 0 citations
#protein folding Open access Aug 2026

Endothelial DANCR deficiency promotes atherosclerotic plaque instability by targeting ribosomal protein L22.

Endothelial DANCR deficiency promotes atherosclerotic plaque instability through activation of the RPL22/p53 pathway, suggesting DANCR as a potential protective factor and therapeutic target in atherosclerosis.

Shu-Ting Wang, Qi-Yue Zhang, Rong-Xia Li et al. · 0 citations
#protein folding Open access Aug 2026

Quantum Biology: Harnessing Entanglement for Biological Information Processing

This research investigates the potential role of quantum entanglement in biological information processing. We explore the feasibility of simulating quantum effects within biological molecules and examining the influence of entanglement on fundamental processes such as DNA sequence recognition and protein folding. The...

Jincheng Zhang · 0 citations
#protein folding Book Open access Aug 2026

The NUMEN/QUATOS Architecture — Unifying Thermodynamic Limits, Cross-Domain Invariants, and Deterministic State-Space Collapse

Description:1. Core Scientific ThesisThis repository serves as a comprehensive scientific reference and educational framework for substrate-native, integer-only computation. It demonstrates that the current reliance on IEEE-754 floating-point arithmetic introduces unnecessary thermodynamic overhead, non-determinism, an...

LLC Dragolich Research Labs · 0 citations
#protein folding Open access Aug 2026

Graph Neural Networks for Protein Structure Prediction via Fragment Assembly

Predicting protein three-dimensional structures from their amino acid sequences remains a grand challenge in computational biology. Traditional methods have struggled to accurately capture the complex, long-range interactions that govern protein folding. This work proposes a novel approach utilizing Graph Neural Networ...

Jincheng Zhang · 0 citations
#protein folding Dataset Open access Aug 2026

Tensor-based Approximation of Molecular Kinetics: Generator Learning, Reaction Coordinates and Incremental Updating

This record contains the code-associated data and figures for "Tensor-based Approximation of Molecular Kinetics: Generator Learning, Reaction Coordinates and Incremental Updating". It provides the precomputed data, results, and figures behind four case studies: a 3D Lemon-Slice toy system, and molecular dynamics trajec...

Feliks Nüske, Peter Benner, Minakshi Verma · 0 citations
#protein folding Book Open access Aug 2026

The NUMEN/QUATOS Architecture — Unifying Thermodynamic Limits, Cross-Domain Invariants, and Deterministic State-Space Collapse

Description:1. Core Scientific ThesisThis repository serves as a comprehensive scientific reference and educational framework for substrate-native, integer-only computation. It demonstrates that the current reliance on IEEE-754 floating-point arithmetic introduces unnecessary thermodynamic overhead, non-determinism, an...

LLC Dragolich Research Labs · 0 citations
#protein folding Open access Aug 2026

Ultrasound-Assisted Enzymatic Deamidation Treatment for Developing Soft Surimi Gel for Dysphagia: Gel Properties, In Vitro Digestibility, and Protein Mechanisms

A fundamental theoretical framework for the development of specialized foods that possess safe swallowing and nutritional attributes is offered and the polarity of the tryptophan residue microenvironment alters and impeding the further folding of unfolded protein structures during heat-induced gelation is examined.

Wei Wang, Qing Shao, Li-Fei Wang et al. · 0 citations
#protein folding Review Open access Aug 2026

Comparison of seven machine learning models for predicting prolonged PACU length of stay: performance evaluation and identification of key influencing factors

The XGBoost model developed in this study achieved a relatively high AUC of 0.901, indicating that the model’s ability to confirm prolonged PACU stay remains somewhat insufficient, and can be used as an auxiliary screening tool in clinical rather than a definitive diagnostic tool.

Na Zhu, Xiang Xiong, Xuan-Zhao Wu et al. · 0 citations
#protein folding Open access Aug 2026

Streptococcus and related oral taxa are differentially abundant in patients with abdominal aortic aneurysms compared with atherosclerotic disease controls

It is demonstrated that the oral microbiome differs between patients with AAA and those with advanced atherosclerotic disease and support further investigation of oral microbial alterations and their relationship to vascular pathologies.

J. T. Geiger, Ann Gill, Mario Matabele et al. · 0 citations
#protein folding Open access Aug 2026

Tissue-specific metal accumulation and tuber metabolic reprogramming in Cyperus esculentus under multiple-metal stress

Understanding plant responses to co-occurring metal contamination is essential for evaluating their phytoremediation potential, yet the physiological and molecular responses of Cyperus esculentus (CES) to combined Cu, Zn, and Cd exposure remain poorly understood. Here, CES plants were exposed to combined Cu, Zn, and Cd...

Chang-Song Ren, Wen-Qi Xiao, Yi-Jie Zhang et al. · 0 citations

From tech blogs

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Google DeepMind Blog Sep 30, 2026

Introducing SynthID Bio

Proof of concept for watermarking AI-generated proteins while preserving biological function.

MIT News · Artificial Intelligence Aug 27, 2026

Looking beyond natural sequences

A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.

Google DeepMind Blog Nov 25, 2025

AlphaFold: Five years of impact

Explore how AlphaFold has accelerated science and fueled a global wave of biological discovery.

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