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P. Panda

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#protein folding Open access Aug 2026

PandaDock: An Open-Source Molecular Docking Platform with Flexible-Ligand Search and Equivariant Neural Scoring

PandaDock’s empirical scoring function ranks 8th of 25 methods evaluated, ahead of every AutoDock Vina and Vinardo configuration tested, while the GNN scores below Vina, consistent with the within-target ceiling identified on SAIR.

P. Panda · bioRxiv · 0 citations