Author

M. Fondi

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Open access Oct 2026

Development of a stable microbial community for the study of plasmid-mediated antimicrobial resistance in a continuous culturing device

Horizontal gene transfer (HGT) is a major contributor to the spread of antimicrobial resistance (AMR) in microbial communities, particularly through conjugative plasmids. The dynamics of the spread of these plasmids in a susceptible microbial community requires a defined and controllable in vitro system, which is curre...

T. Vu, Tania Alonso-Vásquez, Elisa Sestini et al. · bioRxiv · 0 citations

Review Open access Oct 2026

Marine holobionts: a model arena for host–microbe biology, from ecosystem function to biotechnology

Microbial symbioses are the operating system of marine biology. Nearly every macroscopic organism in the ocean exists as a holobiont, the consortium composed of a eukaryotic host and its bacterial, archaeal, microeukaryotic and viral partners. Marine holobionts span a broader range of the metazoan tree of life than l...

Davide Piazza, Marco Graziano, Alessia Avesani et al. · Sustainable Microbiology · 0 citations

#software testing Open access Sep 2026

From code to natural language: MErlin – a multi-omics toolkit for bacterial epigenomics delivered as Claude agent skill

MErlin (Methylation-driven Expression & Regulation Linkage in Interacting Nuclear-domains), a multi-omics toolkit comprising seventeen composable modules, from basecalled modBAM files to ranked gene-level evidence and a self-contained HTML report is presented.

Iacopo Passeri, Solène Pety, Michele Giovannini et al. · bioRxiv · 0 citations