Large-scale, standardized datasets have driven many advances in AI-based scientific modeling, from protein structure prediction to natural language processing. Infectious disease epidemiology is increasingly adopting AI methods for forecasting, surveillance, and outbreak analytics, but the time-series data available to train them remains orders of magnitude smaller than the corpora behind the advances seen in other fields. Because the scope of real-world epidemiological data cannot practically reach the scale needed to train truly large-scale AI methods, simulated data provides a possible alternative. Here we introduce Reservoir, a large open simulator and dataset of realistic epidemic simulations in which every trajectory carries complete ground-truth labels, including quantities that cannot be measured directly in a real outbreak, such as true infection counts, time-varying reproduction numbers, and counterfactual intervention effects. Reservoir is generated by a stochastic simulator with realistic noise and reporting artifacts, together with interventions with configurable timing, compliance, and age-dependent efficacy. The current release contains 500,000 outbreak trajectories spanning one billion simulated days across diverse pathogen characteristics, population structures, and intervention regimes. Reservoir enables counterfactual experiments, surveillance-design studies, and training of epidemic models at a scale real-world datasets cannot provide.
This work introduces Generative Neural Inference for Epidemics (GENIE), a spatio-temporal ML-based framework for high-resolution forecasting of the burden of respiratory pathogens and demonstrates superior performance across a range of measures.
Laura M Guzman-Rincon, George R.E. Bradley, Joel Kandiah et al.· 0 citations
This critical narrative review evaluates statistical, mathematical, machine-learning and hybrid approaches to infectious disease dynamics, with emphasis on inferential purpose, data-generating and observation processes, uncertainty, validation, interpretability and public-health use.
Hamid H. Hussien, Muhammed Aljifri, Nuha Hassan Hagabdulla et al.· Asian Journal of Probability...· 0 citations
There is a potential disconnect between the performance of models vis-a-vis traditional forecasting scores and their performance in answering the questions that variant forecasts are most often used for.
Thanasi Bakis, Andrew F. Magee, S. Olesen· 0 citations
A four-step framework to generate synthetic data for the simulation-based validation of statistical methods is proposed, broadly applicable beyond the specific medical use case, and relies on careful, domain-informed parameter curation to generate meaningful synthetic datasets.
H. Marchi, S. Schmiegel, T. Schamberger et al.· BMC Medical Research Methodo...· 1 citation
ConvRt is a frequentist method for retrospective and real-time estimation of effective reproduction number (R_t) that deconvolves latent infections and then estimates $R_t$ with successive penalized-likelihood steps, using a spline basis to model smooth curves.
Jeremy Goldwasser, R. Tibshirani, A. Bilinski· 0 citations
A lightweight fine-tuning framework is developed that adapts pre-trained LLMs using compact embedding and prediction layers and evaluates it on seven weekly aggregated real-world surveillance datasets, establishing fine-tuned LLMs as efficient and robust forecasting tools suitable for privacy-sensitive, data-scarce pub...
A model developed by researchers at MIT and Boston Children's Hospital adjusts scans on the fly to track fetal movement, potentially sparing families repeat hospital visits.