DrainSinkhorn: Safe Elimination for Batched Entropic Optimal Transport

Abstract

Fast entropic optimal transport backends reduce the cost of each Sinkhorn update, but static batches still run at full width until the slowest problem finishes. We introduce DrainSinkhorn, a verifier-gated active-packing layer for batches of independent Sinkhorn problems. It combines candidate-axis packing, a Sinkhorn-specific one-sided screen, verifier-gated retirement under the backend's configured two-sided residual check, and physical compaction of all candidate-indexed state. The EOT objective, per-instance Sinkhorn map, and stopping rule are unchanged; later kernels run only on unfinished problems. We characterize the removable work exactly. If completion depths differ within a packed window, active execution removes the padding between the static batch rectangle and the observed survival curve. A quotient nonlinear Perron-Frobenius analysis gives a local explanation for these finite-tolerance depth differences: convergence depends on the full modal spectrum and proposal alignment, not only on the slowest mode. DrainSinkhorn achieves state-of-the-art execution performance on the tested heterogeneous batched-EOT workloads within matched backend families. The complete Flash-backed OT path is 4.110x faster on MetroPT-3, 3.798x faster on ImageNet-32 feature couplings, and 1.250-1.270x faster across a five-tolerance Packer19 sweep. Independent implementations reach 2.600x on ImageNet-32 with OTT-JAX, 3.174x on A2D2 LiDAR with PyKeOps, and 1.415x on large ImageNet-32 PyKeOps couplings. End-to-end speedups remain 4.074x on MetroPT-3 and 2.786x on ImageNet-32 feature-space OT flow matching, with all reported residual, consumer-output, and training-quality checks passing.