This work introduces future querying, a paradigm that probes whether large language models can function as implicit medical world models by evaluating their ability to answer time-indexed clinical queries about a patient's future, and shows that small, locally fine-tuned open-weight models can match or approach larger proprietary systems, making the framework suitable for privacy-preserving, on-premise deployment.
Abstract
Traditional clinical prediction models rely on task-specific pipelines and curated, structured data, which scale poorly and underutilize unstructured text. To address this, we introduce future querying, a paradigm that probes whether large language models (LLMs) can function as implicit medical world models by evaluating their ability to answer time-indexed clinical queries about a patient's future. Our framework operates on unstructured clinical documentation using endpoint-agnostic training, enabling a single model to answer diverse clinical queries over patient trajectories without manual feature engineering or task-specific retraining. We show that small, locally fine-tuned open-weight models can match or approach larger proprietary systems, making the framework suitable for privacy-preserving, on-premise deployment. Evaluated on a new synthetic medical reports dataset and real ICU notes from the MIMIC-IV dataset, our results provide encouraging evidence that LLMs can capture aspects of clinical dynamics.
This entry-level tutorial aims to equip healthcare professionals with the tools necessary to effectively integrate LLMs into clinical practice, ensuring that these powerful technologies are applied in a safe, reliable, and impactful manner.
Qiao Jin, Nicholas Wan, Robert Leaman et al.· Nature Protocols· 1 citation
A role-specialized Mixture-of-Agents (MoA) that combines medical knowledge retrieval with contrastive similar-patient reasoning is studied, placing role design as a key factor in privacy-constrained, training-free clinical LLM prediction.
BERT-LER is presented, a BERT-style model for coded EHR timelines pretrained and fine-tuned from a de-identified EHR dataset of 75 million patients, that encodes laboratory test results as discrete tokens while retaining graded information through percentile-based binning, paired with Integrated Gradients for token-lev...
Jun-Ni Du, Lukas Adamek, Maxim A Kryukov et al.· 0 citations
A playbook for fine-tuning LLMs on de-identified clinical notes from patients with pancreatic cancer, spanning both pre-diagnosis and on-treatment settings is presented, and the use of machine-generated annotations to augment limited expert labels is examined, showing that balanced mixtures of synthetic and human data...
Li-Ching Chen, T. Zack, Divneet Mandair et al.· Proceedings of machine learn...· 0 citations
An engineering-oriented, end-to-end roadmap that structures the full lifecycle of clinical language model systems—from model design and domain adaptation to optimization and real-world evaluation is introduced.
CLIR-Bench is introduced, a benchmark for irregular clinical time series QA constructed from de-identified ICU records through a principled four-stage pipeline, enabling evaluation of both answer accuracy and evidence use.
Frank Nie, Ethan B. Liu, Yuan Zhu et al.· arXiv.org· 2 citations
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