This work introduces a domain specific language (DSL)-guided strategy to improve the reasoning and design capability of LLM agents by translating natural language design rules into symbolic predicates encoded in a predefined chemistry DSL, and developed a multi-agent materials design framework.
Abstract
Efficient discovery of high-performance materials has been pursued through a variety of data- and AI-driven strategies, among which inverse design, generating materials from desired target properties, has emerged as an important paradigm. Large language models (LLMs) offer a complementary route for inverse materials design because their reasoning and in-context learning capability can be used not only to propose candidates but also to demonstrate interpretable design principles. In this work, we introduce a domain specific language (DSL)-guided strategy to improve the reasoning and design capability of LLM agents by translating natural language design rules into symbolic predicates encoded in a predefined chemistry DSL. These predicates allow the LLM agent to obtain statistical evidence from the accumulated materials data, enabling the agent to evaluate and refine its own reasoning during the design loop. Based on this strategy, we developed a multi-agent materials design framework, called Operational Rule-grounded CHEmical Search Through Reasoning Agents (ORCHESTRA), and applied it to the inverse design of double perovskite oxides under multiple target-property objectives. The results show that symbolic predicates help the LLM identify unsupported rules, validate newly proposed rules and improve the rule store over iterative design cycles. Compared with a strategy relying only on natural language rules, the DSL-guided framework showed the potential to improve materials design performance, particularly for challenging target properties. These findings suggest that mathematical and statistical grounding can enhance the reasoning capability of LLM agents in materials science and that LLM-based inverse design can be performed effectively without large task-specific datasets or additional model training.
Data-driven materials discovery interpolates more reliably than it extrapolates and seldom reaches new structure types. We present MatEvolve, an agentic-AI framework designing crystals, proposing each candidate with a stated rationale and testing it. The agent reasons in an interpretable \emph{language of motifs}, writing each crystal as a \emph{motif profile} that describes the recurring geometric patterns---the \emph{motifs}---composing it. The motif profile serves not merely as a description of a material but as the medium for material design: the agent edits the profile and constructs a crystal from the modified one, and the most promising candidates are validated by first-principles calculation. Applied to the design of rare-earth-lean permanent magnets, MatEvolve---built on the state-of-the-art language model Claude Fable~5 without fine-tuning---reaches new structural prototypes more than three times as often as generative models under an equal validation budget, at a comparable on-target-magnet rate. Beyond design, analysing the discovered crystals'human-readable profiles reveals structure--property relationships.
Dinh-Khiet Le, Minh-Quyet Ha, Hong-Phuc Vu-Dinh et al.· 0 citations
Automation is transforming scientific discovery by enabling systematic exploration of complex hypotheses. Large language models (LLMs) perform well across diverse tasks and promise to accelerate research, but often struggle with logical structures. Here, we present a framework for biological discovery integrating LLM-based agents with laboratory automation, guided by logical scaffolds incorporating symbolic relational learning, structured vocabularies and experimental constraints. This integration improves coherence and reliability in automated workflows. We couple this AI-driven approach to automated cell-culture and metabolomics platforms, enabling integrated hypothesis validation and refinement, yielding a flexible discovery system. The system identified novel interactions in Saccharomyces cerevisiae, including glutamate-induced growth inhibition in spermine-treated cells and aminoadipate's partial rescue of formic-acid stress. All hypotheses, experiments and data are captured in a graph database employing controlled vocabularies. Existing ontologies are extended, and a novel representation of scientific hypotheses is presented using description logics. This work demonstrates the potential for a reliable machine-driven discovery process in systems biology.
Daniel Brunnsåker, Alexander H. Gower, Prajakta Naval et al.· Journal of the Royal Society...· 2 citations
Multi-step retrosynthesis planning seeks to decompose a target molecule into commercially available building blocks through a sequence of feasible reactions. The vast combinatorial search space makes this task challenging even for expert chemists. Traditional methods combine tree search with offline-trained value networks that score candidates in isolation, without reasoning about complete multi-step routes. Recent work leverages Large Language Models (LLMs) for this task, but relies on simple interfaces that limit exploration of the full search space. We introduce RetroAgent, an LLM agent that bridges symbolic search and neural reasoning through a harness with structured memory. Through memory and chemistry tools, the agent observes the full search state, including explored routes, available alternatives, and properties of intermediates, enabling informed decisions grounded in both global progress and domain knowledge. Experiments on in-distribution and out-of-distribution benchmarks demonstrate that RetroAgent delivers strong performance and generalization.
Yanqiao Zhu, Jingru Gan, Xiaoqi Sun et al.· 0 citations
The coordination of multi-scale tasks is an effective strategy for computational materials discovery, yet the repeated application of diverse algorithms and tools renders it challenging. We report MAESTRO, a large language model (LLM) agent system capable of executing the entire screening pipeline for metal-organic frameworks (MOFs). It processes a large body of MOF literature, links relevant publications to their crystal structures, and curates the results into a computation-ready database, which is then screened through a strategy of progressively increasing computational cost. The promising candidates identified for separation under wet flue gas conditions all originate from unrelated studies. By connecting the heterogeneous stages of computational materials discovery, the LLM-based agents of MAESTRO can operate across application domains and uncover high-performance materials that conventional screening approaches would be unlikely to consider.
Yuntong Chen, Huang Ju, Liu Yu et al.· 0 citations
Metal-organic frameworks (MOFs) offer a highly modular platform for adsorptive gas separation, yet their vast reticular design space makes inverse design difficult under simultaneous constraints of chemical validity, separation performance, and structural diversity. Here, we present LEMO Agent, a large-language-model agent framework for closed-loop inverse design of gas-separation MOFs in MOFid space. LEMO Agent couples language-based candidate generation with MOFid standardization, explicit validity checking, Transformer-based property prediction, structured design memory, and multi-island exploration. Through iterative generate--validate--evaluate--remember cycles, the agent uses feedback from both successful and failed candidates to guide chemically constrained search across linker, metal, and topology choices. We evaluate LEMO Agent on CH$_4$/N$_2$ and CO$_2$/N$_2$ separation tasks. Compared with representative generative, optimization, and agentic baselines, LEMO Agent enriches high-performing candidates, improves predicted separation performance, and maintains broad chemical and topological diversity. Selected candidates are further reconstructed, evaluated by GCMC simulations, and passed through an experimental down-selection workflow based on chemical feasibility and ligand purchasability, leading to initial wet-lab synthesis and SEM characterization. These results demonstrate that large language model agents can serve as interpretable and scalable design engines for accelerating MOF discovery beyond conventional fixed-library screening.
Zhaolin Hu, Hehe Fan, Wangyihan Guo et al.· 0 citations
Developing reliable synthesis routes for complex materials remains a major bottleneck in accelerating materials discovery. This study establishes a large language model-based framework for predicting and optimizing synthesis conditions directly from the literature data. Key synthesis information, including target compounds, precursors, and processing parameters, was systematically extracted from 4407 open-access solid-state synthesis papers and organized into a structured recipe dataset. Using a retrieval-augmented generation (RAG) approach, the system first retrieves similar recipes from the corpus and then generates a new candidate recipe conditioned on those exemplars. The generated recipes were benchmarked against literature data using quantitative scoring metrics, achieving strong agreement with experimentally reported conditions. To validate the predictive capability, the framework was applied to unreported solid-state electrolyte candidates identified through first-principles screening, and multiple oxy-selenide compounds were successfully synthesized through iterative feedback between the model and experiment. The recipe generator accurately refined synthesis parameters over successive trials, demonstrating its ability to reproduce phase-pure products while minimizing trial-and-error. This approach establishes a data-driven, feedback-optimized route to accelerate synthesis design, offering a generalizable paradigm for integrating language models into experimental materials research.
Dong Won Jeon, Dong Hwi Kim, Taeyang Jeon et al.· Advances in Materials· 0 citations