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#machine learning Preprint Open access

Debiasing Message Passing to Mitigate Popularity Bias in GNN-based Collaborative Filtering

Md Aminul Islam Ahmed Sayeed Faruk Sourav Medya Elena Zheleva
Oct 2026
Machine Learning

Abstract

Collaborative filtering (CF) models based on graph neural networks (GNNs) achieve strong performance in recommender systems by propagating user-item signals over interaction graphs. However, they are susceptible to popularity bias, since skewed interactions and repeated message passing across high-order neighborhoods amplify the influence of popular items while suppressing long-tail ones. Existing debiasing approaches, including re-weighting objectives, regularization, causal methods, and post-processing, are less effective in GNN-based settings because they do not directly counteract bias propagated through the aggregation process, and recent in-aggregation weighting methods often rely on static heuristics or unstable embedding estimates. We propose Debiasing Popularity Amplification in Aggregation (DPAA), a popularity debiasing framework for GNN-based CF that integrates adaptive, representation-aware interaction weighting and layer-wise weighting directly into message passing. DPAA assigns interaction-level weights from a representation-based popularity signal, stabilized by a smooth transition from pre-trained to evolving model embeddings during training. It further introduces a layer-wise weighting that amplifies higher-order neighborhoods, surfacing long-range interactions with diverse and underexposed items. Experiments on real-world and semi-synthetic datasets show that DPAA outperforms state-of-the-art popularity bias correction methods for GNN-based CF.

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