In-silico Molecular Docking and ADME/Pharmacokinetic Prediction Studies of Some Novel Benzothiazole Derivatives as Anticancer Agents for the Treatment of Breast Cancer
Jul 2026· International Journal of Drug Delivery Technology· Vol 16· 0 citations· 16 references
TL;DR
The outcome of the present research strengthens the relevance of these compounds as promising lead candidates for the treatment of breast cancer which could help the medicinal chemists and pharmaceutical professionals in further designing and synthesis of more potent drug candidates.
Abstract
Molecular docking simulation of 3 molecules of N-(1H-benzo[d]imidazol-2-yl)-7-chloro-6-fluorobenzo[d]thiazol2-amine with the target receptor aromatase was carried out so as to evaluate their theoretical binding affinities. The
chemical structure of the molecules was accurately drawn using ChemDraw Ultra software, then optimized at density
functional theory (DFT) using Becke’s three-parameter Lee–Yang–Parr hybrid functional (B3LYP/6-311**)
basis set in a vacuum of Spartan 14 software. Subsequently, the docking operation was carried out using PyRx
virtual screening software. Three compounds were developed by fusion of a benzothiazole and benzimidazole
ring system targeting the treatment of breast cancer. The marketed drug Exemestane which is also an aromatase
inhibitor was used as a reference molecule for docking. The highest docking score from all three molecules was
-8.6 kcal/mol which is very near to the standard drug score -9.5 kcal/mol which suggests that the compound
exhibited favorable protein–ligand interactions, indicating its potential as a lead candidate for further
investigation. In-silico ADME and drug-likeness prediction of the molecules showed good pharmacokinetic
properties having high gastrointestinal absorption, orally bioavailable, and less toxic. The outcome of the present
research strengthens the relevance of these compounds as promising lead candidates for the treatment of breast
cancer which could help the medicinal chemists and pharmaceutical professionals in further designing and
synthesis of more potent drug candidates. Moreover, the research also encouraged the in vivo and in vitro
evaluation study for the proposed designed compounds to validate the computational findings.
The docking analysis suggest that selected N-(substituted-1,3-benzothiazol-2-yl)benzamide derivatives, particularly Cp1, Cp3, Cp7, Cp10, Cp12, Cp13, and Cp14 were identified as the most promising lead candidates, with significant potential for anticonvulsant activity.
A. Rufa'i, A. Idris, A. Musa et al.· Molecular Modeling Connect· 0 citations
The MGC803 cell line is a human gastric cancer model frequently used in cancer research. In this context, a combined in silico approach including 3D-QSAR modeling, ADMET analysis, network pharmacology, docking, molecular dynamics and ligand transport evaluations, was applied to design new antiproliferative molecules. A robust 3D-QSAR model with high predictive capacity (R² and Q²) was developed and used to design new compounds (PR1–PR4). After an ADMET screening, the putative biological targets of the non-toxic compounds were predicted using PharmMapper. A network pharmacology analysis identified several hub genes, of which HSP90AA1 had the highest degree value. Given its central role in stabilizing multiple oncogenic proteins involved in gastric cancer progression, as well as its suitability for structure-based studies, HSP90AA1 was selected for molecular docking and molecular dynamics simulations. In addition, molecular docking was performed on HSP90AA1 protein (1YET) in complex with the designed molecules (PR1-PR4), and their predicted binding behaviors were compared to both the most active molecule (M34) and the reference drug, geldanamycin. These results demonstrate a high predicted binding affinity and remarkable interaction profiles within the active site of the HSP90AA1. To further evaluate the dynamic stability of these complexes, we performed molecular dynamics simulations over a 100 ns period, thus confirming stable attachment modes and durable contact networks. The MM-PBSA approach demonstrated favorable binding free energies between the chosen PR4 ligand and the 1YET protein (-26.47 ± 2.89 kcal/mol). Finally, the ligand transport study showed that the PR4 ligand easily crosses tunnels 1 and 2 with optimal theoretical transport dynamics compared to the reference drug, geldanamycin (GA). This comprehensive computational method underlines the diverse potential of the examined molecules, identifying the most promising candidates for subsequent experimental validation against gastric cancer.
L. Naanaai, Abdellah El Aissouq, Yassine El Allouche et al.· Beni-Suef University Journal...· 0 citations
Several 1,2,3-triazole hybrids based on cabotegravir were assessed in an integrated computational methodology for their potential as anticancer agents by targeting a lung cancer-associated protein.
In this study, due to the side effect profiles and low efficacy of currently used inhibitors, novel benzimidazole-oxadiazole derivatives (6a–6e, 7a–7e) were synthesized as dual inhibitors of α-GLY and AR. Their structures were elucidated using 13C-NMR and 1H-NMR techniques. Their binding properties were investigated by molecular docking studies, and their ADME properties were screened in silico. AR and α-GLY inhibitory effects of the synthesized compounds were examined. The compounds were observed to exhibit partially similar inhibitory effects to the reference drug epalrestate (IC50: 0.78 nM; KI: 0.74 ± 0.0 nM) on AR inhibition. Among them, compounds 6a, 6b, and 6c showed the highest activity with KI values of 8.6 ± 0.4, 3.5 ± 0.3 and 6.3 ± 0.5 nM, respectively. Compounds 6a and 7e were found to have higher inhibitory activity against the α-GLY enzyme than the reference drug Acarbose (IC50: 128.4 µM; KI: 96.2 ± 5.7 µM) with KI values of 5.8 ± 0.4 and 7.9 ± 0.8 µM, respectively. Overall, the newly synthesized compounds demonstrated pronounced AR inhibitory activity and notable α-GLY inhibition. Nevertheless, further pharmacological and toxicity evaluations are required to confirm their therapeutic potential. Among the tested molecules, compounds 6a and 7e may therefore be considered potential candidates for further investigation as anti-diabetic agents.
Mesut Işık, Abdüllatif Karakaya, U. A. Çevik et al.· Molecules· 0 citations
Abstract A series of novel sulfonamide derivatives of 6-(aminothiazole) flavones have been designed, synthesized and evaluated in MTT cell proliferation assay against three human cell lines, HeLa (Cervical carcinoma), Hep3B (Hepatocytic carcinoma) and MCF-7 (Breast carcinoma). All the compounds were analyzed by spectroscopic methods. Compound 10c IC50 of 21.93 µM is the good inhibitor of MCF-7 cell line. In sulfonamide series 10h with IC50 values 20.32 µM and 17.23 µM against HeLa and HeP3B cell lines is showing activity comparable with methotrexate. Docking results also have supported above observations by indicating that compounds are held in the active pocket by combination of various hydrogen and hydrophobic interactions. Graphical abstractChemical synthesis diagram of 2-Aminothiazole and Flavone hybridization, with IC50 values and molecular docking of compound 10b with proteins.The figure presents a detailed chemical synthesis diagram split into sections. At the top left, the structure of 2-Aminothiazole (pink) and Flavone (blue) are displayed, connected by an arrow indicating their hybridization. Below is a modified Flavone derivative marked with a sulfonamide group (in red). The central section features compound 10h's structure along with its HeLa IC50 = 20.32 µM and Hep3B IC50 = 17.23 µM values. Two molecular docking images illustrate compound 10b interacting with proteins 7L1X and 3QX3, labeled with amino acids and molecular interactions.
N. M. Thorat, Ashvini U. Chaudhari, A. P. Ingale et al.· Phosphorus Sulfur and Silico...· 0 citations
This research developed a promising lead molecule (HIT1) as a therapeutic approach for ER-positive breast cancer through pharmacophore model-based drug design of thiazine derivative targeting ERα via pharmacophore model-based drug design.
M. S. Sanjeev, Bhim Singh, Kailash Jangid et al.· Journal of Molecular Graphic...· 0 citations
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