#edge computing Open access

BioMCP-TS v0.8.0: a zero-config Model Context Protocol server for biomedical data federation and in-process WebAssembly analysis

Ye Yuan

Aug 2026 · Zenodo (CERN European Organization for Nuclear Research)

Abstract

Archived source release of BioMCP-TS v0.8.0 (npm package biomcp): 41 core tools across 15 registration modules federating 33 verified upstream data hosts, plus optional plugin sets for read-only SQL analytics and in-process WebAssembly compute (Bioconductor DESeq2/edgeR/limma under webR; samtools/bedtools/bcftools under biowasm). Zero-config stdio MCP server for Node >= 22.13, single runtime dependency. Repository: https://github.com/yeyuan98/biomcp-ts (live development continues there; this record archives the exact tag evaluated in the Technical Report).

DOI

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