MARC-TS, a two-stage framework that learns a continuous, endpoint-conditioned path, queries it at any resolution and uses local path context to refine a transition-state candidate, is introduced.
Abstract
Transition states are defined by reaction pathways, yet most machine-learning methods predict them as isolated geometries. We introduce MARC-TS, a two-stage framework that learns a continuous, endpoint-conditioned path, queries it at any resolution and uses local path context to refine a transition-state candidate. We construct T1x-IRC-8K, a dataset of 8,209 reactions and 1,088,725 path-resolved geometries. On held-out reactions, the path model reduced complete-path error by 48.4% relative to endpoint interpolation, and the localizer achieved a mean aligned structural error of 0.127 {\AA}. Quantum-chemical optimization and vibrational analysis yielded 405 frequency-confirmed first-order saddle-point candidates from 410 predictions. In a 100-reaction nudged elastic band comparison, learned-path initialization reached a joint geometry-and-force target for 66% of reactions, compared with 12% for geometric interpolation after 100 optimizer steps. By treating the path as a reusable representation rather than an auxiliary output, MARC-TS connects transition-state prediction, mechanistic interpretation and quantum-chemical refinement.
Predicting transition states (TS) in chemical reactions is crucial, as they provide insights into reaction mechanisms. Recent work on TS prediction have focused on flow matching supervised on straight linear paths that do not align with actual reaction trajectories. We propose a novel flow matching-based framework ReCu...
TransTS is designed to provide reliable TS initial guesses for subsequent quantum-chemical refinement, where generated structures are evaluated not only by geometric similarity but also by their ability to converge to validated saddle points and recover the intended reaction pathways after refinement.
Kai-Peng Zeng, Wen-Xin Zhai, Sheng-Rui Xu et al.· 0 citations
Transition-state searches remain a major bottleneck in reaction discovery, as identifying valid saddle-point structures requires numerous expensive quantum-chemical calculations. Generative models can reduce this burden by proposing candidates from reactant and product geometries, but supervised training on geometries...
Yun-Yang Li, Ze-Chang Sun, Kuang Yu et al.· 0 citations
Self-supervised pretraining substantially improves TS prediction for previously unseen systems, lowering the median root-mean-square deviation of TS geometries on Transition1x-TMC reactions and reducing fine-tuning data requirements, enabling reliable performance even in low-data regimes.
Samir Darouich, Jacob W. Toney, Wei-Liang Luo et al.· Nature Computational Science· 4 citations
This work introduces MAELLE (MechAnistic Edit fLow-matching on eLectron rEarrangements), which instead models reactions as discrete flow matching over electron occupation vectors and naturally recovers mechanistic trajectories that align with known chemistry and can predict side products of a reaction.
X. Nguyen, Octavian Susanu, Daniel P. Armstrong et al.· 1 citation
General-purpose machine-learning interatomic potentials (MLIPs) for organic reactions need to be accurate on both the minimum energy path (MEP) for static evaluation of basic properties and the broader configurational space for simulating reaction dynamics. Existing general datasets for gas-phase organic reactions rely...
Wan-Run Jiang, Jin-Zhe Zeng, Man-Yi Yang et al.· 0 citations
We use cookies to run the site and, with your consent, for analytics and to show ads.
See our Cookie Policy.