Jul 2026· Journal of Medicinal Chemistry· Vol 69, pp. 16288-16308· 0 citations· 142 references
Medicine
TL;DR
Three core medicinal chemistry strategies, including side-chain replacement, conformational constraint, and scaffold hopping, are applied to optimize the lead compound and validate this strategy through representative case studies and summarize key practical challenges: off-target toxicity and difficulties in modifying privileged scaffolds.
Abstract
Privileged drug structures refer to substructures that impart drug-like properties, including high target affinity, favorable pharmacokinetic profiles, and structural modifiability. In cross-species drug repositioning, targets should be prioritized based on homologous proteins that exhibit high structural and functional conservation across members of the same virus family. Subsequently, validated, safe, and druggable privileged structures must be identified. Thereafter, computational chemistry and structural biology approaches are systematically employed to evaluate the structure's potential binding affinity and mode of interaction with the newly identified disease-relevant target. In this phase, three core medicinal chemistry strategies, including side-chain replacement, conformational constraint, and scaffold hopping, are applied to optimize the lead compound. We validate this strategy through representative case studies and summarize key practical challenges: off-target toxicity and difficulties in modifying privileged scaffolds. Leveraging their advantages while innovating repositioning methods can improve drug development efficiency, quality, and responsiveness to unmet clinical needs.
It is proposed that systematic integration of NP-inspired scaffolds with modern discovery platforms and computational tools, represents the most productive current framework for targeting disease-relevant complexes previously considered inaccessible, expanding the boundary of druggability across oncology, cardiovascular, and metabolic medicine.
Bailey McIntosh, Y. Koay· Current Opinion in Chemical...· 0 citations
Pyrazolone and its keto-enol tautomers constitute a privileged class of scaffolds in contemporary medicinal chemistry, characterized by remarkable structural plasticity. This review comprehensively summarizes recent advancements in the structural optimization of pyrazolone-based compounds, highlighting how molecular hybridization drives polypharmacology against complex conditions, including neurodegenerative disorders, inflammation, metabolic syndromes, cancer, and infectious diseases. By detailing structure-activity relationships, the review elucidates how the strategic pharmacophore merging at the N-1, C-3, and C-4 positions transforms the pyrazolone core into highly potent therapeutics. Mechanistically, these hybrid molecules exhibit diverse capabilities, such as inhibiting key survival kinases, blocking pathogenic protein aggregation, antagonizing immune checkpoints, and restoring cellular redox homeostasis via robust reactive oxygen species scavenging. Ultimately, this review underscores the critical role of molecular hybridization in overcoming drug resistance, minimizing systemic toxicity, and driving the future discovery of pyrazolone-based precision therapeutics.
Ke-Long Tang, Yao Liu, Jingning Luo et al.· ChemMedChem· 0 citations
The central theme, conformational analysis, links on-target potency via pre-organization of the bioactive conformation with physics-based physicochemical property prediction with physics-based physicochemical property prediction, highlighting neutral polarity as a key determinant of permeability and exposure.
Drug repurposing has emerged as an effective strategy to accelerate the drug discovery process by identifying new therapeutic applications for existing drugs. Among the various computational techniques employed in drug repurposing, molecular docking has gained significant importance due to its ability to predict ligand–protein interactions, binding affinity, and molecular stability with high efficiency and reduced cost. The present mini review highlights the fundamental principles, methodologies, and applications of molecular docking in drug repurposing research. Different docking approaches, including rigid docking, flexible docking, and induced-fit docking, along with commonly used software such as AutoDock, Glide, GOLD, and Schrödinger Suite, are discussed. The review further emphasizes the wide applications of molecular docking in identifying potential therapeutics for infectious diseases, cancer, neurodegenerative disorders, and cardiovascular diseases. Particular attention is given to the role of docking studies during the COVID-19 pandemic, where several approved drugs were rapidly screened against SARS-CoV-2 targets. In addition, recent advances involving artificial intelligence, machine learning, molecular dynamics simulations, network pharmacology, and structural bioinformatics have considerably improved the accuracy and efficiency of docking-based drug repurposing studies. Despite these advancements, challenges such as protein flexibility, inaccuracies in scoring functions, computational limitations, and false-positive predictions remain major concerns. Therefore, integration of docking with complementary computational and experimental approaches is essential for improving prediction reliability and therapeutic validation. Overall, molecular docking continues to serve as a powerful and economical tool in modern drug repurposing research, offering promising opportunities for accelerated drug discovery and precision medicine.
Murtaza R, Jay Gupta, Sourabh D. Jain et al.· International Journal of Pha...· 0 citations
Abstract The rhodanine core or 2-thioxothiazolidin-4-one, a five-membered heterocyclic ring system, has garnered significant interest in drug discovery, owing to its diverse biological activities. Derivatization of rhodamine has yielded many clinically useful therapeutic compounds for various ailments due to the presence of both nitrogen and sulfur heteroatoms within its ring system. Its broad-spectrum activities are facilitated by its two key electrophilic binding groups, ketone and thioketone, which enable interactions with various biological targets. Significant advances have been made toward its efficient synthetic strategies for drug discovery and development. This comprehensive review discusses rational design strategies for rhodanine-based heterocycles and their therapeutic potential as antibacterial, anti-diabetes, anti-Alzheimer’s, anticancer, anthelmintic, anti-obesity, and against COVID-19. The article also sheds light on the synthetic strategies used to develop rhodamine derivatives and drug design supported with detailed structure-activity relationships (SAR). Further molecular docking providing mechanistic insights into their binding modes within receptors are also presented. These structural insights could help in further rational design of potent rhodamine derivatives as newer and safer therapeutic agents. Graphical AbstractCentral yellow molecular structure linked to various disease icons: anticancer, antibacterial, anti-Alzheimer, anti-COVID-19, antidiabetic, and anthelmintic.The diagram presents a central yellow molecular structure with elements like nitrogen (N), sulfur (S), and oxygen (O). It illustrates connections to diverse biological applications: anticancer, antibacterial, anti-Alzheimer, anti-COVID-19, antidiabetic & anti-obesity, and anthelmintic, represented by icons in surrounding circles. A curved green line labeled "Structure Activity Relationship" encircles the categories. Above, a labeled 'Drug Design' oval and precursor molecules R-NH2, ClCH2COOH, and CS2 are included, visually connecting the drug synthesis process and biological targets.
R. Nath, Lakshminarayan Das, Arka Chakraborty et al.· Phosphorus Sulfur and Silico...· 0 citations
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