Sep 2026· Zenodo (CERN European Organization for Nuclear Research)
Abstract
This dataset supports the structure-guided analysis of the MFN2 C-terminal modulator surface in the review "Conformational allocation of mitofusin 2 in neuronal mitochondrial dynamics: mechanisms and therapeutic targeting". It contains receptor and ligand coordinates, docking configurations, raw poses and logs, solvent-accessibility and pocket-detection results, analysis tables, scripts, software records and checksums.Version 1.1.0 adds the complete methods and two computation tables relocated from the manuscript, the current integrated Figure 6 and its caption, source-data and coordinate crosswalks, a field dictionary and file inventories. Four historical rendering inputs omitted from version 1.0.0 are also supplied with their original filenames and restoration paths. The 784 files from version 1.0.0 are preserved byte for byte. No calculations or numerical results have changed.The complete ZIP is self-contained. The separate methods document and two CSV tables are identical convenience copies of files inside it. The former Figures 6 and 7 are represented by the integrated main Figure 6. Historical labels remain unchanged within the original archive.Docking tests local geometric compatibility and coordinate-derived exposure. It does not establish native-membrane accessibility, binding affinity, selectivity or therapeutic response. Fixed search seeds are technical searches, not biological replicates.
This publication proposes a definition and a classification of agile software development approaches and analyses ten software development methods that can be characterized as being "agile" against the defined criterion.
P. Abrahamsson, O. Salo, Jussi Ronkainen et al.· arXiv.org· 727 citations· ⚡54
The study shows that agile practices improve both informal and formal communication, but indicates that, in larger development situations involving multiple external stakeholders, a mismatch of adequate communication mechanisms can sometimes even hinder the communication.
M. Pikkarainen, Jukka Haikara, O. Salo et al.· Empirical Software Engineeri...· 401 citations· ⚡48
The results indicate that software engineering work practices are chosen opportunistically, adapted and configured to provide value under the constrains imposed by the startup context.
Nicolò Paternoster, Carmine Giardino, M. Unterkalmsteiner et al.· Information and Software Tec...· 394 citations· ⚡54
The results show that the embedded industry has been able to apply agile methods in its development processes and that the appreciation of the agile methods and their individual practices appears to increase once adopted and applied in practice.
O. Salo, P. Abrahamsson· IET Software· 238 citations· ⚡9
Consequences of happiness and unhappiness that are beneficial and detrimental for developers' mental well-being, the software development process, and the produced artifacts are found.
D. Graziotin, Fabian Fagerholm, Xiaofeng Wang et al.· Journal of Systems and Softw...· 236 citations· ⚡13
The Mobile-D approach is briefly outlined here and the experiences gained from four case studies are discussed, which helped develop an agile development approach for mobile application development.
P. Abrahamsson, Antti Hanhineva, H. Hulkko et al.· Conference on Object-Oriente...· 225 citations· ⚡18
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