Urinary stone segmentation: A computationally efficient yet consistently effective approach using image processing

Abstract

Objectives To assess the effectiveness of our proposed urinary segmentation method based upon image processing, and to contrast its performance against various approaches. Subjects and Methods Non-contrast-enhanced computed tomography (NCCT) scans of instances with stone disease were collected. An experienced urologist and a senior radiology resident generated ground truths by manually drawing the regions of interest (ROIs) of stone samples. The proposed method took loosely defined ROIs as input and included three steps: (1) finding mean_HU_rim, the mean Hounsfield unit (HU) of the stone rim, on each NCCT slice by an edge detection operator; (2) considering pixels with HU higher than the minimum value of all the mean_HU_rim; and (3) removing noise. The entire data was divided into a developing set of 406 samples to evaluate the performance of the proposed method as well as to fine-tune a nnUNetv2 model and a comparison test set of 125 samples to compare the performance and inference time of various segmentation methods. In addition, the reproducibility of our method was tested on the 30 samples randomly selected from the entire data. Results A total of 531 stone samples from 287 instances were included. Our method showed a high level of agreement with the ground truth in the developing set, with the median (interquartile range) Dice coefficient of 0.86 (0.81 - 0.89). The reproducibility of our method was remarkably high with the median (interquartile range) Dice coefficient of 1.0 (0.991 - 1.0). On the comparison test set, our semi-automatic segmentation outperformed the fixed thresholding and deep-learning-based methods. Lastly, the inference time of the proposed method was less than a second. Conclusion The proposed semi-automatic approach provided a consistently reliable, simple, and robust method to segment urinary stones.