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Zhuoyang Chen

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Open access Jul 2026

ProtAug: An Empirical Investigation of pLM-Guided Data Augmentation for Protein Sequence Prediction Tasks

ProtAug is proposed, a framework that leverages encoder-based and autoregressive pLMs to generate augmented sequences with user-controlled variation levels to investigate pLM-guided substitution-based augmentation across seven protein prediction tasks.

Zhuoyang Chen, Ruoqing Wang, Qiong Luo · 0 citations
Open access Jul 2026

ProtBLIP2-SST: Protein Function Prediction via BLIP2 with Sequence, Structure, and Text

Through a unified two-stage alignment-and-generation pipeline, ProtBLIP2-SST integrates protein sequence and structural information, overcomes the rigidity of traditional GO-centric classification, generating open-ended captions that jointly describe molecular function, subcellular location, and homology context in one single output.

Zhuoyang Chen, Qiong Luo · 0 citations

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