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Author

Yuta Ishimoto

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Preprint Aug 2026

How Well Do LLMs Generate Taxonomies in the SE Domain? A Multi-perspective Evaluation Framework

Taxonomies provide a shared conceptual framework for organizing heterogeneous observations in software engineering (SE) research. Manually constructing such taxonomies is labor-intensive and requires annotators with expertise in the SE domain. While advances in Large Language Models (LLMs) have led to the emergence of automated taxonomy generation methods outside the SE domain, their applicability to technically complex SE artifacts remains unclear. In this experience paper, we present the first comprehensive empirical evaluation of how state-of-the-art automated methods perform on SE artifacts through a multi-perspective evaluation framework, including taxonomy quality, alignment with taxonomies defined by human experts, reliability under independent annotation, and efficiency. To support this evaluation, we systematically collect seven SE papers with publicly available artifacts and human-defined taxonomies, and conduct experiments using two automated methods (TnT-LLM and CLIMB) with five state-of-the-art LLMs. Our evaluation reveals a clear trade-off: TnT-LLM constructs high-quality taxonomies comparable to human-defined ones but incurs substantially higher cost and runtime and tends to generate overly complex taxonomies, whereas CLIMB is 15--40$\times$ faster and 8--49$\times$ cheaper but tends to score lower on quality when technical inference beyond surface-level similarity is required. These findings suggest that TnT-LLM and CLIMB can be used in practical situations in the SE domain, while researchers should first assess the complexity of the generated taxonomies and their cost using a subset of the target data to decide whether to use automated methods or human experts. Our work represents a first step toward a systematic understanding of automated taxonomy generation in SE, offering actionable insights for future research and practice.

Sota Nakashima, Yuta Ishimoto, Masanari Kondo et al. · 0 citations
Jul 2026

RepTran: Search-Based Repair of Transformer Models

To ensure the overall quality of AI-enabled software, not only traditional software components but also AI components need to be tested and repaired. Among AI components, Transformer models are increasingly integrated into software systems, which makes their misbehaviors critical. Although prior work in the software engineering community has proposed deep neural network (DNN) repair methods, most overlook Transformer-specific structures. We propose RepTran, a search-based repair method for Transformer models. It targets their feed-forward networks (FFNs), which play a central role in the architecture. RepTran identifies suspicious weights by combining two types of scores: a variance-based neuron score and an existing bidirectional score. It then iteratively optimizes these weights using differential evolution. Our evaluation includes 18 fault benchmarks constructed from CIFAR-100 and Tiny-ImageNet. We compare RepTran against three baselines: random weight selection, Arachne (a state-of-the-art DNN repair method), and ArachneW, which enables Arachne to control the number of selected weights. RepTran achieved an average repair rate of 74.7%, statistically outperforming random selection and Arachne across all benchmarks. Effect size analysis revealed that RepTran achieved higher repair rates than ArachneW regardless of the number of selected weights. These results suggest that RepTran is effective for enhancing the reliability of AI-enabled software.

Yuta Ishimoto, Paolo Arcaini, Fuyuki Ishikawa et al. · 0 citations

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