Author

Yu-Zhe Sun

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Open access Sep 2026

Farming reshapes the gut resistome, virulome, and mobilome of Cervidae

ABSTRACT The rapid expansion of cervid farming raises concerns about antimicrobial resistance (AMR) dissemination, yet its impact on the Cervidae gut microbiome remains poorly characterized. We integrated 89 newly sequenced fecal metagenomes with 599 publicly available datasets, comprising 285 metagenomes from farmed c...

Yu-Zhe Sun, Jin-Wen Su, Hany M. Elsheikha et al. · Virulence · 1 citation

Open access Aug 2026

Genome-resolved analysis of colonization factor repertoires reveals ecological stratification in cervid gut microbiomes

Introduction Colonization factors (CFs) are important microbial traits associated with persistence and host adaptation in the gut, yet their large-scale organization in cervid gut microbiomes remains unclear. Methods A total of 3,311 non-redundant high-quality metagenome-assembled genomes (MAGs), derived from 688 cervi...

Hao Ni, Qing-Long Gong, Jian-Ming Li et al. · Frontiers in Microbiology · 0 citations