Yijun Gu

EvoSNR-Prom: Predicting promoters at single-nucleotide resolution with label-aware transfer learning of the pretrained EVO model

EvoSNR-Prom is built on the Evo foundation model and formulates promoter identification as a token-level sequence labeling problem, analogous to named entity recognition in natural language processing, and a lexicon-enhanced embedding strategy is introduced that incorporates biologically meaningful DNA lexicons, enriching contextual representations and improving the model’s ability to capture complex sequence motifs.