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Yiheng Zhu

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#natural language process... Preprint Sep 2026

Func-R1: Incentivizing Mathematical Function Reasoning in Multimodal Large Language Models

Performing deliberate mathematical reasoning in visual contexts is a hallmark of advanced Multimodal Large Language Models (MLLMs) and requires a sophisticated synthesis of perceptual grounding and symbolic logic. However, in the realm of mathematical functions, our investigation reveals a critical modality interferenc...

Ming Yin, Xiaohai Wang, Dian Li et al. · 0 citations
Book Open access Aug 2026

Caduceus: MoE Foundation Models for Unifying Biological and Natural Language

This paper introduces Caduceus, a family of MoE-enhanced foundation models built with a hierarchical pre-training paradigm to jointly integrate biological and natural language, and incorporates a multi-task instruction tuning phase, enabling robust protein parsing and natural language question answering.

Ming-Ze Yin, Yiheng Zhu, Jialu Wu et al. · 1 citation
Open access Jul 2026

IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

IgGM2 follows a structure-to-design strategy: it first learns how immune receptors are positioned around fixed target structures, and then transfers this target-conditioned structural prior to CDR design, allowing frame-work geometry to adapt to designed CDRs without separate inverse folding or external sidechain packi...

Jian Ma, Fandi Wu, Lin Yao et al. · 0 citations
#machine learning Open access Jun 2025

HiCLR: Knowledge-Induced Hierarchical Contrastive Learning with Retrosynthesis Prediction Yields a Reaction Foundation Model

HiCLR is the first foundation model that can be broadly applied to various synthesis-related tasks, and it achieves state-of-the-art performance in reaction classification, reaction condition recommendation, reaction yield prediction, synthesis planning, and even molecular property prediction.

Jialu Wu, Yiheng Zhu, Xiaorui Wang et al. · 0 citations
#natural language process... Book Open access Aug 2026

Caduceus: MoE Foundation Models for Unifying Biological and Natural Language

This paper introduces Caduceus, a family of MoE-enhanced foundation models built with a hierarchical pre-training paradigm to jointly integrate biological and natural language, and incorporates a multi-task instruction tuning phase, enabling robust protein parsing and natural language question answering.

Mingze Yin, Yiheng Zhu, Jialu Wu et al. · 0 citations

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