Author

Yana Bromberg

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Open access Sep 2026

Fusion2AI: functional re-annotation of the bacterial transparent matter proteins

Determining the biological function of bacterial proteins remains a central challenge in microbiology. We previously developed Fusion, a reference-free scheme that clustered the tens of millions of known, unique, bacterial proteins into about four hundred thousand groups of functionally similar proteins, i.e. functions...

Aiden Maloney-Bertelli, Yana Bromberg · bioRxiv · 0 citations

#protein folding Open access Oct 2026

REFinder: Mining new enzymes from metagenomes

Microbial metagenomes encode vast catalytic diversity, but recovering enzymes of novel, yet-undescribed functionality typically requires whole-community assembly plus a means of identifying active proteins ab initio. The first step of the task is compute-intensive and misses low-abundance sequences. The second is compl...

R. Prabakaran, Yana Bromberg · bioRxiv · 0 citations