Author

Y. Liu

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Open access Sep 2026

A little longer, a lot better: simulation-guided exploration of extended-length single-end barcoded reads for structural variant detection

increasing read length consistently improves SV detection accuracy, with SE1000_stLFR achieving the best performance among the evaluated stLFR configurations and showing competitive performance relative to ICLR- and pangenome-based approaches, while approaching the performance of long-read methods.

Can Luo, Y. Liu, Han Liu et al. · Bioinformatics Advances · 0 citations

Open access Aug 2026

Benchmarking cell type annotation in spatial transcriptomics: resolving cellular hierarchies, biological fidelity, and dynamic cell states

A comprehensive, context-specific guide to current annotation strategies for spatial transcriptomics is presented and open-set recognition of reference-absent cell states, adaptive incorporation of spatial context, and improved resolution of rare and transitional cell identities are identified as central priorities for...

Yu-Ling Zhu, Yunfei Hu, M. Xie et al. · Research Square · 0 citations