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Sep 2026

Multilevel ensemble for genome-wide prediction of cell-specific G-quadruplexes utilizing transformed sequences and enhanced chromatin accessibility with G4Beacon2.

G-quadruplexes (G4) are prevalent non-B DNA structures playing crucial biological roles in cells. Although experimental technologies for G4 identification in vitro and in vivo are advancing, computational prediction methods are increasingly preferred for their efficiency, convenience, and cost effectiveness. However, e...

Tian-Tong Tao, Rong Zhang, Hui-Ling Shu et al. · 0 citations
Open access Jul 2026

TNEAtlas: A Pan-cancer Database to Identify and Characterize Transcribed Non-coding Elements.

Advances in precision oncology have underscored the need to move beyond regulatory frameworks centered on protein-coding regions and better understand regulatory mechanisms within the non-coding genome. To systematically characterize transcribed non-coding elements (TNEs) in cancer, we developed an automated computatio...

Wenyong Zhu, Rong Zhang, Xiao Sun · 0 citations

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