Complete analysis companion for outcome-blind identifiability diagnostics in pooled kinase inhibitor screens
Version 1.2.0 preserves the unchanged v1.1.0 analysis companion and adds paper_a_analysis_amendment_v1_2_0.zip. Read the amendment MANUSCRIPT_VALUE_MAP.md for the current results. The amendment supplies Source Data 1–3, figure-source tables, rank-aware geometry, direction-level predictive attribution, source-defined sequencing-partition provenance, exploratory replicate QC, count-generator calibration and validation, selected analysis scripts, and scientific Supplementary Methods SM1–SM7. It clarifies the original-feature-scale eta calculation and outer-training preprocessing before inner ridge selection; no frozen numerical results were changed by the wording correction. The old 94.26% shared-variance value belongs to the historical T-plus-analyst-bin design, not the current T-only spectrum. Use both ZIP files together with the referenced public inputs. The amendment is not a standalone raw-count reproduction environment; original project paths and dependencies are required. Historical release-integrity tests verify the historical files, not all new analyses. No patient-level clinical data or private manuscript are included. Code retains the MIT License; third-party data retain their original terms. The separate PooledScreenID software release remains version 0.1.2.