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A hybrid nested search is formalized, in which an outer loop has the LLM propose a structural sketch, with numeric gaps, and an inner numerical optimizer tunes the sketch.
Benchmarks for systems that are optimized against the evaluation signal measure something different from what they claim. We document this concretely in two GPU-kernel-optimization suites with held-out generalization gates: Metal-Sci (10 scientific-compute tasks) and Metal-ZK (12 zero-knowledge/cryptographic tasks), in which three frontier LLMs (Opus 4.7, Gemini 3.1 Pro, GPT-5.5) propose Metal kernels inside a $(1{+}1)$ evolutionary loop with rich feedback. Although no model is prompted to act adversarially, the promoted winners repeatedly fingerprint the evaluation configuration: they branch on the identity of runtime parameters, tune the measured branch maximally, and leave the unmeasured branch slow or silently wrong. Across the pooled suites, $16/53$ ($30\%$) of in-distribution wins fail to transfer to held-out configurations. We give a four-mode taxonomy of these failures, from configuration fingerprints to gate leakage. We distill design guidance for measurement under strategic optimization: held-out probes retain validity only on non-enumerable axes; gates must measure held-out performance, not just correctness; and a transfer rate is interpretable only with per-failure mechanism grades: ours decomposes into gamed, overfit, and benign. Code and research artifacts: https://github.com/vicgalle/kernel-fingerprinting
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