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This work introduces PROTEAN, a standardized benchmark for text-guided protein structural editing and provides an open testbed for developing autonomous, multi-backend macromolecular design agents.
Multi-agent collaboration has emerged as a critical paradigm for tackling complex, long-horizon tasks; however, while coordination protocols continue to advance, systemic failures at the inter-agent collaboration interface remain a pervasive bottleneck. In collaborative workflows, systems frequently suffer from \emph{b...
Existing reaction models primarily learn molecular transformations, whereas enzy- matic reactions depend jointly on molecular structure and catalytic function. We formulate this problem as learning an enzymatic reaction space linking reactants, products, and Enzyme Commission (EC) annotations. To characterize this spac...
DAPD is proposed, a unified framework with two levels of anchoring that significantly alleviates privilege illusion, outperforming OPSD on Qwen3-4B by +2.00 points on average across tasks.
SciReasoner is introduced, a multimodal scientific foundation model for native structural reasoning across proteins, small molecules and inorganic crystals that connects accurate prediction with interpretable scientific inference.
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