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Author

Shi Han

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Open access Sep 2026

Accurate and scalable decontamination of imaging-based spatial transcriptomics via optimal transport

Imaging-based spatial transcriptomics enables molecule-resolved profiling of gene expression and tissue organization in situ. However, segmentation errors, transcript spillover and three-dimensional cell overlap can introduce misassigned transcripts into cell-level expression profiles, compromising biological interpret...

Yu-Heng Chen, Yu-Yao Liu, Zi-Tong Chao et al. · 0 citations
Preprint Jul 2026

Auto-Fill: Learning to Predict Missing Values Accurately with Specialist Language Models

Predicting missing cell values in tabular data is a fundamental problem in data cleaning. While state-of-the-art reasoning models show great promise in predicting missing values in tables, by reasoning holistically across rows and columns, they are costly to deploy at scale and tend to be overconfident, often generatin...

Yurong Liu, Yeye He, Haoyu Dong et al. · 0 citations

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