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Serena Singh

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#machine learning Preprint Sep 2026

Analysis of Quantized and Efficiently Adapted Protein Language Models

Background: Protein language models (PLMs) are increasingly used for sequence generation and property prediction, but their size makes fine-tuning and deployment expensive. The effects of quantization and parameter efficient fine-tuning on performance, representations and generation remain insufficiently characterized....

I. Zeisler, Sebastian Clancy, P. Bayat et al. · 0 citations
Open access Jul 2026

RAPID: evaluation of Cas12a protospacer nicking and chimeric reporters for PAM-independent RNA and DNA diagnostics

RAPID (RNA/DNA Advanced chimeric, PAM-independent, Integrated Nicking, Diagnostics), a nick-tuned, PAM-duplex-mediated platform for PAM-independent RNA and DNA detection and applies it to detect single-point mutations in ssDNA and RNA substrates, a challenge for traditional Cas12 and Cas13 systems.

I. Iwe, Frank X. Liu, A. Corsano et al. · 0 citations
Open access Jul 2026

Minimal Data · Maximal Insight (MDMI): A Structure-guided Pipeline for Discovering Functional Alternatives in Peptide-Protein Interfaces

Minimal Data Maximal Insight (MDMI), a two-stage structure-guided computational pipeline that designs functional peptide variants using only a small, annotated dataset, demonstrates that structure-informed pipelines can uncover remote functional sequence space from minimal data.

P. Bayat, Spencer J. Perkins, Sebastian Clancy et al. · 0 citations

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