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Quinn E Eberhard

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Open access Jul 2026

Scanning transcriptomes for nonlinear, domain-level similarities using hmSEEKR

Long noncoding RNAs (lncRNAs) play roles in gene regulation across kingdoms of life. However, lncRNAs with related functions often lack linear sequence similarity, making it difficult to leverage studies of one lncRNA to inform the understanding of others. We describe a k-mer-based hidden Markov model, hmSEEKR, that en...

Shuang Li, Daniel Sprague, Quinn E Eberhard et al. · 0 citations

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